Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_L03
         (495 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    27   1.2  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    27   2.1  
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces...    26   2.7  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   4.7  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    25   4.7  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   4.7  
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    25   6.3  
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha...    25   8.3  

>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 18/77 (23%), Positives = 38/77 (49%)
 Frame = +1

Query: 67  DMEKAFDKVWHQGMLYKLLTTTTIPRKILHVLKSFLEDRRAQVVVEGQVSREFPMRAGVP 246
           D++  FD + H  ++  LL++    ++ + +++  L    A  + E +   +     G P
Sbjct: 370 DIKACFDSIPHDKLI-ALLSSKIKDQRFIQLIRKALN---AGYLTENRYKYDI---VGTP 422

Query: 247 QGSCLSPSLYAVYTNDM 297
           QGS +SP L  +Y + +
Sbjct: 423 QGSIVSPILANIYLHQL 439


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 35  ETDNTSQLYCWTWRRRLTKYGTRGCYTNC 121
           +T +  ++  WT R   TK  TR CY +C
Sbjct: 816 DTSDKQRVPSWTDRILATKSFTRNCYKSC 844


>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 282 DGVKARREAATLRDSGSHRELPRHLAFD 199
           D VKA  EAAT        ++P+H A D
Sbjct: 93  DAVKAAAEAATTTPVTKKHQMPKHYASD 120


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -2

Query: 161 RTWRIFLGIVVVVNSLYSIPWCHTLSNAF-SMSSSTTATYCLF 36
           + +R+ L +  ++   Y + W H +S AF S+SS++ +T  LF
Sbjct: 9   KKYRLIL-LWCILGIAYILFWTHRISKAFASVSSTSDSTVHLF 50


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +1

Query: 157 VLKSFLEDRRAQVVVEGQVSREFPMRAGVPQGSCLSPSLYAVYTNDM 297
           + K   E     +V  G  + ++  + G+PQGS LS  L   Y  D+
Sbjct: 678 IFKMLKEHLSGHIVKIG--NSQYLQKVGIPQGSILSSFLCHFYMEDL 722


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 2/90 (2%)
 Frame = +1

Query: 37  NRQYVAVVLLDMEKAFDK--VWHQGMLYKLLTTTTIPRKILHVLKSFLEDRRAQVVVEGQ 210
           +R YV    +D+ KA     V   G + ++         +L  L  FL      ++    
Sbjct: 52  HRPYVYSAFMDVVKALHNEIVDFPGFIERISVILRDYPDLLEYLNIFLPSSYKYLLSNSG 111

Query: 211 VSREFPMRAGVPQGSCLSPSLYAVYTNDMP 300
            +  F ++   P G   +PS Y    ND+P
Sbjct: 112 AN--FTLQFTTPSGPVSTPSTYVATYNDLP 139


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 115 KLLTTTTIPRKILHVLK 165
           KL    T+PRKI+HVL+
Sbjct: 206 KLRAICTVPRKIVHVLQ 222


>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
           Prh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 719

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -1

Query: 105 PLVPYFVKRLLHVQQYNC--DVLSVSSC 28
           PL+P   + +L  +++NC  +V+ V SC
Sbjct: 514 PLLPSLARAVLAAREHNCLSEVIDVVSC 541


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,955,115
Number of Sequences: 5004
Number of extensions: 37996
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)