Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_L03
         (495 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0405 + 23183366-23185558                                         28   4.7  
02_01_0485 + 3487578-3487635,3488281-3488399,3488600-3488698,348...    28   4.7  
06_03_0735 - 23987349-23989196                                         27   6.3  
08_01_0680 - 5958066-5960253,5960707-5961503                           27   8.3  

>11_06_0405 + 23183366-23185558
          Length = 730

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -2

Query: 170 KDFRTWRIFLGIVVVVNSLYSIPWCHTLSNAFSMSSSTTATYCLFLLAV 24
           K F  WR+ L   +V   +Y     H LS +    S    TYC+ +L V
Sbjct: 326 KGFPGWRMLLAGSLVSAVMYLGFVVHRLSKSPDTDSKLFVTYCIIVLVV 374


>02_01_0485 +
           3487578-3487635,3488281-3488399,3488600-3488698,
           3488795-3488851,3488954-3489109,3489227-3489311,
           3489489-3489579,3489693-3489857,3489923-3490045,
           3490244-3490319,3490486-3490633,3490769-3491934,
           3492041-3492231,3492321-3492513
          Length = 908

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 263 ERQLPCGTPALIGNSRDTWPSTTTWARRSSRKDFRT 156
           +R  P G P+L G   D   S+  W R S    F++
Sbjct: 381 KRPWPTGLPSLYGGKEDDLASSLMWLRDSQNTGFQS 416


>06_03_0735 - 23987349-23989196
          Length = 615

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 136 IPRKILHVLKSFLEDRRAQVVVEGQVSREFPMRAGVPQGSCLS 264
           +PR + H L++F +  R  VV    +   F +RAG+P+ +  S
Sbjct: 86  LPRHLPHALRAFDDLPRRDVVAHSSILAAF-LRAGMPRRALAS 127


>08_01_0680 - 5958066-5960253,5960707-5961503
          Length = 994

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -2

Query: 188  ARRSSRKDFRTWRIFLGIVVVVNSLYSIPW-CHTLSNAFSMSSSTTATYCLFLLAVSIMS 12
            +R  +    R  RI  G ++  NSL    + CH +S  F ++      +  F+L +S++S
Sbjct: 914  SRGGAEPYLRFARIRSGSLIGANSLIRHSFTCHRVSALFLLNHILAILFSKFILCISVLS 973

Query: 11   M 9
            +
Sbjct: 974  L 974


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,791,068
Number of Sequences: 37544
Number of extensions: 289142
Number of successful extensions: 921
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)