Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_L03
(495 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 107 6e-24
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 107 6e-24
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 106 1e-23
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 105 3e-23
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 104 6e-23
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 102 3e-22
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 101 5e-22
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 101 7e-22
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 101 7e-22
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 93 1e-19
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 93 1e-19
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 93 1e-19
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 93 1e-19
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 93 1e-19
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 93 1e-19
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 93 2e-19
AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p pro... 90 1e-18
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 85 4e-17
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 85 4e-17
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 85 4e-17
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 85 4e-17
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 54 8e-08
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 54 1e-07
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 51 7e-07
AY071740-1|AAL49362.1| 184|Drosophila melanogaster RH47344p pro... 46 4e-05
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 40 0.002
BT010243-1|AAQ23561.1| 672|Drosophila melanogaster RE42927p pro... 30 2.0
AE014134-2381|AAN10840.1| 672|Drosophila melanogaster CG31814-P... 30 2.0
AE014296-1273|AAF50550.2| 478|Drosophila melanogaster CG8540-PA... 29 2.6
BT010210-1|AAQ23528.1| 711|Drosophila melanogaster RH61964p pro... 28 8.0
AE014134-965|AAN10554.1| 711|Drosophila melanogaster CG11147-PB... 28 8.0
AE014134-964|AAF52284.2| 711|Drosophila melanogaster CG11147-PA... 28 8.0
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 107 bits (258), Expect = 6e-24
Identities = 60/151 (39%), Positives = 82/151 (54%), Gaps = 8/151 (5%)
Frame = +1
Query: 28 ARRNRQYVAVVLLDMEKAFDKVWHQGMLYKLLTTTTIPRKILHVLKSFLEDRRAQVVVEG 207
A N++Y LD+++AFD+VWH G+LYK P ++ V+KSFLE+R V V+G
Sbjct: 573 AMENKEYAVGAFLDIQQAFDRVWHPGLLYK--AKRLFPPQLYLVVKSFLEERTFHVSVDG 630
Query: 208 QVSREFPMRAGVPQGSCLSPSLYAVYTNDMPVR-GWTE-------LALFADDAAYFHVDN 363
S P+ AGVPQGS L P+LY+V+ +DMP TE +A +ADD A
Sbjct: 631 YKSSIKPIAAGVPQGSVLGPTLYSVFASDMPTHTPVTEVDEEDVLIATYADDTAVLTKSK 690
Query: 364 TPLDAQIETQRLLDTLPEWLRRWRLRANVGK 456
+ L A Q LD +W W +R N K
Sbjct: 691 SILAATSGLQEYLDAFQQWAENWNVRINAEK 721
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 107 bits (258), Expect = 6e-24
Identities = 60/151 (39%), Positives = 82/151 (54%), Gaps = 8/151 (5%)
Frame = +1
Query: 28 ARRNRQYVAVVLLDMEKAFDKVWHQGMLYKLLTTTTIPRKILHVLKSFLEDRRAQVVVEG 207
A N++Y LD+++AFD+VWH G+LYK P ++ V+KSFLE+R V V+G
Sbjct: 375 AMENKEYAVGAFLDIQQAFDRVWHPGLLYK--AKRLFPPQLYLVVKSFLEERTFHVSVDG 432
Query: 208 QVSREFPMRAGVPQGSCLSPSLYAVYTNDMPVR-GWTE-------LALFADDAAYFHVDN 363
S P+ AGVPQGS L P+LY+V+ +DMP TE +A +ADD A
Sbjct: 433 YKSSIKPIAAGVPQGSVLGPTLYSVFASDMPTHTPVTEVDEEDVLIATYADDTAVLTKSK 492
Query: 364 TPLDAQIETQRLLDTLPEWLRRWRLRANVGK 456
+ L A Q LD +W W +R N K
Sbjct: 493 SILAATSGLQEYLDAFQQWAENWNVRINAEK 523
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 106 bits (255), Expect = 1e-23
Identities = 54/146 (36%), Positives = 79/146 (54%)
Frame = +1
Query: 19 IDTARRNRQYVAVVLLDMEKAFDKVWHQGMLYKLLTTTTIPRKILHVLKSFLEDRRAQVV 198
I TA R+Y V LD+ +AFDKVW G+++K+ ++P +LKS+L DR+ V
Sbjct: 566 IRTAFEYREYCTAVFLDVSQAFDKVWLDGLMFKI--KISLPESTHKLLKSYLYDRKFAVR 623
Query: 199 VEGQVSREFPMRAGVPQGSCLSPSLYAVYTNDMPVRGWTELALFADDAAYFHVDNTPLDA 378
S + AGVPQGS L P+LY +YT D+P ++ FADD A +P+ A
Sbjct: 624 CNTATSTVHTIEAGVPQGSVLGPTLYLIYTADIPTNSRLTVSTFADDTAILSRSRSPIQA 683
Query: 379 QIETQRLLDTLPEWLRRWRLRANVGK 456
+ L + +WL WR++ N K
Sbjct: 684 TAQLALYLIDIKKWLSDWRIKVNEQK 709
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p protein.
Length = 906
Score = 105 bits (252), Expect = 3e-23
Identities = 61/149 (40%), Positives = 80/149 (53%), Gaps = 8/149 (5%)
Frame = +1
Query: 37 NRQYVAVVLLDMEKAFDKVWHQGMLYKLLTTTTIPRKILHVLKSFLEDRRAQVVVEGQVS 216
+++Y V +DM++AFD+VWH G++ K+ P VLKS+LEDRR V V S
Sbjct: 575 DKEYCNAVFIDMQQAFDRVWHDGLISKV--KKLFPAPYYGVLKSYLEDRRFMVRVRNSYS 632
Query: 217 REFPMRAGVPQGSCLSPSLYAVYTNDMPVRGWTE--------LALFADDAAYFHVDNTPL 372
MRAGVPQGS L P LY+V+T D+P LA +ADD A + N
Sbjct: 633 IPRVMRAGVPQGSVLGPLLYSVFTADLPCPNAYHMADPRKALLATYADDIALLYSSNCCN 692
Query: 373 DAQIETQRLLDTLPEWLRRWRLRANVGKT 459
+A Q L TL W +RW L+ N KT
Sbjct: 693 EAARGLQEYLTTLAAWCKRWILKVNPQKT 721
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 104 bits (250), Expect = 6e-23
Identities = 54/146 (36%), Positives = 80/146 (54%)
Frame = +1
Query: 19 IDTARRNRQYVAVVLLDMEKAFDKVWHQGMLYKLLTTTTIPRKILHVLKSFLEDRRAQVV 198
I TA +R+Y + LD+ +AFD+VW G+L+K++ +P+ +LKS+L +R +
Sbjct: 564 IRTAFEHREYCTAIFLDVAQAFDRVWLDGLLFKIIKL--LPQNTHKLLKSYLYNRVFAIR 621
Query: 199 VEGQVSREFPMRAGVPQGSCLSPSLYAVYTNDMPVRGWTELALFADDAAYFHVDNTPLDA 378
+ SR+ + AGVPQGS L P LY +YT D P+ + FADD A P+ A
Sbjct: 622 CDTSTSRDCAIEAGVPQGSVLGPILYTLYTADFPIDYNLTTSTFADDTAILSRSKCPIKA 681
Query: 379 QIETQRLLDTLPEWLRRWRLRANVGK 456
R L ++ WL WR+ NV K
Sbjct: 682 TALLSRHLTSVERWLADWRISINVQK 707
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 102 bits (244), Expect = 3e-22
Identities = 53/146 (36%), Positives = 79/146 (54%)
Frame = +1
Query: 19 IDTARRNRQYVAVVLLDMEKAFDKVWHQGMLYKLLTTTTIPRKILHVLKSFLEDRRAQVV 198
I TA +R+Y + LD+ +AFD+VW G+L+K++ +P+ +LKS+L + +
Sbjct: 564 IRTAFEHREYCTAIFLDVAQAFDRVWLDGLLFKIIKL--LPQNTHKLLKSYLYNTVFAIR 621
Query: 199 VEGQVSREFPMRAGVPQGSCLSPSLYAVYTNDMPVRGWTELALFADDAAYFHVDNTPLDA 378
+ SR+ + AGVPQGS L P LY +YT D P+ + FADD A P+ A
Sbjct: 622 CDTSTSRDCAIEAGVPQGSVLGPILYTLYTADFPIDYNLTTSTFADDTAILSRSKCPIKA 681
Query: 379 QIETQRLLDTLPEWLRRWRLRANVGK 456
R L ++ WL WR+ NV K
Sbjct: 682 TALLSRHLTSVERWLADWRISINVQK 707
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown protein.
Length = 908
Score = 101 bits (242), Expect = 5e-22
Identities = 59/157 (37%), Positives = 83/157 (52%), Gaps = 5/157 (3%)
Frame = +1
Query: 4 RGIDIIDTARRNRQYVAVVLLDMEKAFDKVWHQGMLYKLLTTTTIPRKILHVLKSFLEDR 183
R ++ I TA +++Y + LD+ +AFD+VWH G+ K+ T+P +LKS+LE R
Sbjct: 563 RVVEQILTAYDSKEYCNSLFLDIREAFDRVWHIGLQLKI--KQTLPAPYFGLLKSYLEGR 620
Query: 184 RAQVVVEGQVSREFPMRAGVPQGSCLSPSLYAVYTNDMP-----VRGWTELALFADDAAY 348
R V +S E + AGVPQGS L P LY +Y++DMP + G + LA FADD
Sbjct: 621 RFAVRFHSAISTEHNVAAGVPQGSVLGPLLYCLYSHDMPQPDVSLYGKSMLATFADDVCV 680
Query: 349 FHVDNTPLDAQIETQRLLDTLPEWLRRWRLRANVGKT 459
+ DA Q EW RRW + N K+
Sbjct: 681 TYRSRCEHDAADGIQDFAYRFSEWARRWNIGINSSKS 717
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 101 bits (241), Expect = 7e-22
Identities = 52/145 (35%), Positives = 85/145 (58%)
Frame = +1
Query: 34 RNRQYVAVVLLDMEKAFDKVWHQGMLYKLLTTTTIPRKILHVLKSFLEDRRAQVVVEGQV 213
+++Q V +V LD+E AFD VWH G+L+KL T P ++ ++++FL R V +
Sbjct: 598 QSKQSVGLVTLDIEAAFDTVWHDGLLHKLKMIGT-PIYLIKIVQNFLTHRYFSVNLNSSQ 656
Query: 214 SREFPMRAGVPQGSCLSPSLYAVYTNDMPVRGWTELALFADDAAYFHVDNTPLDAQIETQ 393
S + AGVPQGS L P+L+ ++T+D+P L+LFADDAA + + + Q
Sbjct: 657 SARRILNAGVPQGSVLGPTLFNIFTHDIPQATNCVLSLFADDAAVYSAGFSYSEINQSMQ 716
Query: 394 RLLDTLPEWLRRWRLRANVGKTQAL 468
L+ L + ++W+++ N KT A+
Sbjct: 717 SYLNELDIYYKKWKIKINPNKTNAI 741
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 101 bits (241), Expect = 7e-22
Identities = 52/145 (35%), Positives = 85/145 (58%)
Frame = +1
Query: 34 RNRQYVAVVLLDMEKAFDKVWHQGMLYKLLTTTTIPRKILHVLKSFLEDRRAQVVVEGQV 213
+++Q V +V LD+E AFD VWH G+L+KL T P ++ ++++FL R V +
Sbjct: 546 QSKQSVGLVTLDIEAAFDTVWHDGLLHKLKMIGT-PIYLIKIVQNFLTHRYFSVNLNSSQ 604
Query: 214 SREFPMRAGVPQGSCLSPSLYAVYTNDMPVRGWTELALFADDAAYFHVDNTPLDAQIETQ 393
S + AGVPQGS L P+L+ ++T+D+P L+LFADDAA + + + Q
Sbjct: 605 SARRILNAGVPQGSVLGPTLFNIFTHDIPQATNCVLSLFADDAAVYSAGFSYSEINQSMQ 664
Query: 394 RLLDTLPEWLRRWRLRANVGKTQAL 468
L+ L + ++W+++ N KT A+
Sbjct: 665 SYLNELDIYYKKWKIKINPNKTNAI 689
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 93.5 bits (222), Expect = 1e-19
Identities = 56/162 (34%), Positives = 86/162 (53%), Gaps = 9/162 (5%)
Frame = +1
Query: 1 ARGIDIIDTARRNRQYVAVVLLDMEKAFDKVWHQGMLYKLLTTTTIPRKILHVLKSFLED 180
AR I A ++Y + V LD+ +AFD+VWH+G+L KL +P + +L+S+L +
Sbjct: 491 ARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKL--AKILPYNLYIILESYLTN 548
Query: 181 RRAQVVVE-GQVSREFPMRAGVPQGSCLSPSLYAVYTNDMPV-----RGWTE---LALFA 333
R +V + G+ SR + AGVPQGS L P LY+++++DMP+ TE L+ +A
Sbjct: 549 RTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIFSSDMPLPHIYHPSPTERIMLSTYA 608
Query: 334 DDAAYFHVDNTPLDAQIETQRLLDTLPEWLRRWRLRANVGKT 459
DD D A + L T +W +W + N KT
Sbjct: 609 DDTIVLSSDILATAATRNNENYLKTFSDWADKWGISVNAAKT 650
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 93.5 bits (222), Expect = 1e-19
Identities = 55/162 (33%), Positives = 86/162 (53%), Gaps = 9/162 (5%)
Frame = +1
Query: 1 ARGIDIIDTARRNRQYVAVVLLDMEKAFDKVWHQGMLYKLLTTTTIPRKILHVLKSFLED 180
AR I A ++Y + V LD+ +AFD+VWH+G+L KL +P + +L+S+L +
Sbjct: 619 ARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKL--AKILPYNLYIILESYLTN 676
Query: 181 RRAQVVVE-GQVSREFPMRAGVPQGSCLSPSLYAVYTNDMPV-----RGWTE---LALFA 333
R +V + G+ SR + AGVPQGS L P LY+++++DMP+ T+ L+ +A
Sbjct: 677 RTFEVKDQAGETSRTGQIGAGVPQGSNLGPLLYSIFSSDMPLPYIYRPSPTQRIMLSTYA 736
Query: 334 DDAAYFHVDNTPLDAQIETQRLLDTLPEWLRRWRLRANVGKT 459
DD D A + L T +W +W + N KT
Sbjct: 737 DDTIVLSSDTLATAATRNNENYLKTFSDWADKWGISVNAAKT 778
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 93.5 bits (222), Expect = 1e-19
Identities = 56/162 (34%), Positives = 86/162 (53%), Gaps = 9/162 (5%)
Frame = +1
Query: 1 ARGIDIIDTARRNRQYVAVVLLDMEKAFDKVWHQGMLYKLLTTTTIPRKILHVLKSFLED 180
AR I A ++Y + V LD+ +AFD+VWH+G+L KL +P + +L+S+L +
Sbjct: 607 ARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKL--AKILPYNLYIILESYLTN 664
Query: 181 RRAQVVVE-GQVSREFPMRAGVPQGSCLSPSLYAVYTNDMPV-----RGWTE---LALFA 333
R +V + G+ SR + AGVPQGS L P LY+++++DMP+ TE L+ +A
Sbjct: 665 RTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIFSSDMPLPHIYHPSPTERIMLSTYA 724
Query: 334 DDAAYFHVDNTPLDAQIETQRLLDTLPEWLRRWRLRANVGKT 459
DD D A + L T +W +W + N KT
Sbjct: 725 DDTIVLSSDILATAATRNNENYLKTFSDWADKWGISVNAAKT 766
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 93.5 bits (222), Expect = 1e-19
Identities = 56/162 (34%), Positives = 86/162 (53%), Gaps = 9/162 (5%)
Frame = +1
Query: 1 ARGIDIIDTARRNRQYVAVVLLDMEKAFDKVWHQGMLYKLLTTTTIPRKILHVLKSFLED 180
AR I A ++Y + V LD+ +AFD+VWH+G+L KL +P + +L+S+L +
Sbjct: 607 ARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKL--AKILPYNLYIILESYLTN 664
Query: 181 RRAQVVVE-GQVSREFPMRAGVPQGSCLSPSLYAVYTNDMPV-----RGWTE---LALFA 333
R +V + G+ SR + AGVPQGS L P LY+++++DMP+ TE L+ +A
Sbjct: 665 RTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIFSSDMPLPHIYHPSPTERIMLSTYA 724
Query: 334 DDAAYFHVDNTPLDAQIETQRLLDTLPEWLRRWRLRANVGKT 459
DD D A + L T +W +W + N KT
Sbjct: 725 DDTIVLSSDILATAATRNNENYLKTFSDWADKWGISVNAAKT 766
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 93.5 bits (222), Expect = 1e-19
Identities = 56/162 (34%), Positives = 86/162 (53%), Gaps = 9/162 (5%)
Frame = +1
Query: 1 ARGIDIIDTARRNRQYVAVVLLDMEKAFDKVWHQGMLYKLLTTTTIPRKILHVLKSFLED 180
AR I A ++Y + V LD+ +AFD+VWH+G+L KL +P + +L+S+L +
Sbjct: 569 ARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKL--AKILPYNLYIILESYLTN 626
Query: 181 RRAQVVVE-GQVSREFPMRAGVPQGSCLSPSLYAVYTNDMPV-----RGWTE---LALFA 333
R +V + G+ SR + AGVPQGS L P LY+++++DMP+ TE L+ +A
Sbjct: 627 RTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIFSSDMPLPHIYHPSPTERIMLSTYA 686
Query: 334 DDAAYFHVDNTPLDAQIETQRLLDTLPEWLRRWRLRANVGKT 459
DD D A + L T +W +W + N KT
Sbjct: 687 DDTIVLSSDILATAATRNNENYLKTFSDWADKWGISVNAAKT 728
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 93.5 bits (222), Expect = 1e-19
Identities = 56/162 (34%), Positives = 86/162 (53%), Gaps = 9/162 (5%)
Frame = +1
Query: 1 ARGIDIIDTARRNRQYVAVVLLDMEKAFDKVWHQGMLYKLLTTTTIPRKILHVLKSFLED 180
AR I A ++Y + V LD+ +AFD+VWH+G+L KL +P + +L+S+L +
Sbjct: 607 ARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKL--AKILPYNLYIILESYLTN 664
Query: 181 RRAQVVVE-GQVSREFPMRAGVPQGSCLSPSLYAVYTNDMPV-----RGWTE---LALFA 333
R +V + G+ SR + AGVPQGS L P LY+++++DMP+ TE L+ +A
Sbjct: 665 RTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIFSSDMPLPHIYHPSPTERIMLSTYA 724
Query: 334 DDAAYFHVDNTPLDAQIETQRLLDTLPEWLRRWRLRANVGKT 459
DD D A + L T +W +W + N KT
Sbjct: 725 DDTIVLSSDILATAATRNNENYLKTFSDWADKWGISVNAAKT 766
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 93.1 bits (221), Expect = 2e-19
Identities = 55/162 (33%), Positives = 86/162 (53%), Gaps = 9/162 (5%)
Frame = +1
Query: 1 ARGIDIIDTARRNRQYVAVVLLDMEKAFDKVWHQGMLYKLLTTTTIPRKILHVLKSFLED 180
AR I A ++Y + V LD+ +AFD+VWH+G+L KL +P + +L+S+L +
Sbjct: 607 ARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKL--AKILPYNLYIILESYLTN 664
Query: 181 RRAQVVVE-GQVSREFPMRAGVPQGSCLSPSLYAVYTNDMPV-----RGWTE---LALFA 333
R +V + G+ SR + AGVPQGS L P LY+++++DMP+ TE L+ +A
Sbjct: 665 RTFEVKDQAGETSRTGQIGAGVPQGSNLGPLLYSIFSSDMPLPYIYRPSPTERIMLSTYA 724
Query: 334 DDAAYFHVDNTPLDAQIETQRLLDTLPEWLRRWRLRANVGKT 459
DD D A + L + +W +W + N KT
Sbjct: 725 DDTIVLSSDTLATAATRNNENYLKSFSDWADKWGISVNAAKT 766
>AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p
protein.
Length = 241
Score = 90.2 bits (214), Expect = 1e-18
Identities = 45/123 (36%), Positives = 69/123 (56%)
Frame = +1
Query: 19 IDTARRNRQYVAVVLLDMEKAFDKVWHQGMLYKLLTTTTIPRKILHVLKSFLEDRRAQVV 198
I TA +R+Y + LD+ +AFD+VW G+++K++ +P+ I +LKS+L+ R V
Sbjct: 105 IRTAFEHREYCTALFLDVAQAFDRVWLDGLMFKIIQL--LPQNIHKLLKSYLDKRVFAVR 162
Query: 199 VEGQVSREFPMRAGVPQGSCLSPSLYAVYTNDMPVRGWTELALFADDAAYFHVDNTPLDA 378
S +F + AGVPQGS L P LY +YT D+P + FADD A P+
Sbjct: 163 CSSSTSSDFTIEAGVPQGSVLGPILYTLYTADIPTNYQLTIFTFADDTAIISRSRCPVKT 222
Query: 379 QIE 387
++
Sbjct: 223 TMQ 225
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 85.4 bits (202), Expect = 4e-17
Identities = 57/170 (33%), Positives = 85/170 (50%), Gaps = 17/170 (10%)
Frame = +1
Query: 1 ARGIDIIDTARRNRQYVAVVLLDMEKAFDKVWHQGMLYKLLTTTTIPRKILHVLKSFLED 180
AR I A + + LD+ +AFD+VWH G+LYKL + IPR + +L+++L +
Sbjct: 163 ARVTQFILKAFDEKDVCSATFLDITEAFDRVWHDGLLYKL--SRLIPRYLFDLLENYLSN 220
Query: 181 RRAQVVVEGQV-SREFPMRAGVPQGSCLSPSLYAVYTNDMP---VRGWTE---------- 318
R V ++G+ SR +RAGVPQGS L P LY++Y++DMP V+ +
Sbjct: 221 RTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYSIYSSDMPYPIVKDYMRNISFPDYHPT 280
Query: 319 ---LALFADDAAYFHVDNTPLDAQIETQRLLDTLPEWLRRWRLRANVGKT 459
LA +ADD A Q L+ W ++W + N KT
Sbjct: 281 NIILATYADDTIILSRSKYTKLAINLNQNYLNVFCRWSKKWDIAINAKKT 330
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 85.4 bits (202), Expect = 4e-17
Identities = 57/170 (33%), Positives = 85/170 (50%), Gaps = 17/170 (10%)
Frame = +1
Query: 1 ARGIDIIDTARRNRQYVAVVLLDMEKAFDKVWHQGMLYKLLTTTTIPRKILHVLKSFLED 180
AR I A + + LD+ +AFD+VWH G+LYKL + IPR + +L+++L +
Sbjct: 610 ARVTQFILKAFDEKDVCSATFLDITEAFDRVWHDGLLYKL--SRLIPRYLFDLLENYLSN 667
Query: 181 RRAQVVVEGQV-SREFPMRAGVPQGSCLSPSLYAVYTNDMP---VRGWTE---------- 318
R V ++G+ SR +RAGVPQGS L P LY++Y++DMP V+ +
Sbjct: 668 RTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYSIYSSDMPYPIVKDYMRNISFPDYHPT 727
Query: 319 ---LALFADDAAYFHVDNTPLDAQIETQRLLDTLPEWLRRWRLRANVGKT 459
LA +ADD A Q L+ W ++W + N KT
Sbjct: 728 NIILATYADDTIILSRSKYTKLAINLNQNYLNVFCRWSKKWDIAINAKKT 777
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 85.4 bits (202), Expect = 4e-17
Identities = 57/170 (33%), Positives = 85/170 (50%), Gaps = 17/170 (10%)
Frame = +1
Query: 1 ARGIDIIDTARRNRQYVAVVLLDMEKAFDKVWHQGMLYKLLTTTTIPRKILHVLKSFLED 180
AR I A + + LD+ +AFD+VWH G+LYKL + IPR + +L+++L +
Sbjct: 610 ARVTQFILKAFDEKDVCSATFLDITEAFDRVWHDGLLYKL--SRLIPRYLFDLLENYLSN 667
Query: 181 RRAQVVVEGQV-SREFPMRAGVPQGSCLSPSLYAVYTNDMP---VRGWTE---------- 318
R V ++G+ SR +RAGVPQGS L P LY++Y++DMP V+ +
Sbjct: 668 RTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYSIYSSDMPYPIVKDYMRNISFPDYHPT 727
Query: 319 ---LALFADDAAYFHVDNTPLDAQIETQRLLDTLPEWLRRWRLRANVGKT 459
LA +ADD A Q L+ W ++W + N KT
Sbjct: 728 NIILATYADDTIILSRSKYTKLAINLNQNYLNVFCRWSKKWDIAINAKKT 777
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 85.4 bits (202), Expect = 4e-17
Identities = 57/170 (33%), Positives = 85/170 (50%), Gaps = 17/170 (10%)
Frame = +1
Query: 1 ARGIDIIDTARRNRQYVAVVLLDMEKAFDKVWHQGMLYKLLTTTTIPRKILHVLKSFLED 180
AR I A + + LD+ +AFD+VWH G+LYKL + IPR + +L+++L +
Sbjct: 610 ARVTQFILKAFDEKDVCSATFLDITEAFDRVWHDGLLYKL--SRLIPRYLFDLLENYLSN 667
Query: 181 RRAQVVVEGQV-SREFPMRAGVPQGSCLSPSLYAVYTNDMP---VRGWTE---------- 318
R V ++G+ SR +RAGVPQGS L P LY++Y++DMP V+ +
Sbjct: 668 RTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYSIYSSDMPYPIVKDYMRNISFPDYHPT 727
Query: 319 ---LALFADDAAYFHVDNTPLDAQIETQRLLDTLPEWLRRWRLRANVGKT 459
LA +ADD A Q L+ W ++W + N KT
Sbjct: 728 NIILATYADDTIILSRSKYTKLAINLNQNYLNVFCRWSKKWDIAINAKKT 777
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 54.4 bits (125), Expect = 8e-08
Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 4/149 (2%)
Frame = +1
Query: 37 NRQYVAVVLLDMEKAFDKVWHQGMLYKLLTTTTIPRKILHVLKSFLEDRRAQVVVEGQVS 216
+++Y A++ LD++ AF+ ++ + +P I V+ ++ DR V E
Sbjct: 547 SKKYCAIITLDVKNAFNTA-RWPIILGAMRNLGVPDYIRGVIGNYFRDRVLWYVTEDG-P 604
Query: 217 REFPMRAGVPQGSCLSPSLYAV-YTNDMPV---RGWTELALFADDAAYFHVDNTPLDAQI 384
R + AGVPQGS L P L+ + Y + + RG EL FADD A V T + Q
Sbjct: 605 RSHQVSAGVPQGSVLGPILWNIMYDGILSISKPRG-VELHCFADDVAITAVAKTIPELQD 663
Query: 385 ETQRLLDTLPEWLRRWRLRANVGKTQALM 471
+ + EWL + L+ KT+ ++
Sbjct: 664 ISNVAITAAIEWLEKVGLKIAAHKTEVVL 692
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 54.0 bits (124), Expect = 1e-07
Identities = 37/149 (24%), Positives = 68/149 (45%), Gaps = 4/149 (2%)
Frame = +1
Query: 34 RNRQYVAVVLLDMEKAFDKVWHQGMLYKLLTTTTIPRKILHVLKSFLEDRRAQVVVEGQV 213
+++ + ++V LD +AFD+V ++ +L T P KI+ +K+F+ +R+ V V
Sbjct: 565 KSKMHTSLVTLDFSRAFDRVGVHSIIQQLQEWKTGP-KIIKYIKNFMSNRKITVRVGPHT 623
Query: 214 SREFPMRAGVPQGSCLSPSLYAV----YTNDMPVRGWTELALFADDAAYFHVDNTPLDAQ 381
S P+ G+PQGS +S L+ + +N + + + +ADD N +
Sbjct: 624 SSPLPLFNGIPQGSPISVILFLIAFNKLSNIISLHKEIKFNAYADDFFLIINFNKNTNTN 683
Query: 382 IETQRLLDTLPEWLRRWRLRANVGKTQAL 468
L D + W ++ K Q L
Sbjct: 684 FNLDNLFDDIENWCSYSGASLSLSKCQHL 712
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 51.2 bits (117), Expect = 7e-07
Identities = 34/112 (30%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Frame = +1
Query: 28 ARRNRQYVAVVLLDMEKAFDKVWHQGMLYKLLTTTTIPRKILHVLKSFLEDRRAQVVVEG 207
A + +V+++ D E+AFD+V +L +L PR + +++K+F+ +R +V +
Sbjct: 571 ALSTKNHVSILATDFERAFDRVGIHAVLCRLERWGIGPR-LYNLIKAFMTNRSFRVRINN 629
Query: 208 QVSREFPMRAGVPQGSCLSPSLYAVY---TNDMPVRGW-TELALFADDAAYF 351
S + G+PQGS LS L+ + ND+ R ++L+ADDA F
Sbjct: 630 VTSNSHILHNGIPQGSPLSVVLFMIAIEDINDIVTRHKDIYISLYADDAIIF 681
>AY071740-1|AAL49362.1| 184|Drosophila melanogaster RH47344p
protein.
Length = 184
Score = 45.6 bits (103), Expect = 4e-05
Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 3/114 (2%)
Frame = +1
Query: 139 PRKILHVLKSFLEDRRAQVVVEGQVSREFPMRAGVPQGSCLSPSLY-AVYTN--DMPVRG 309
P ++ ++S+ +R V R + GVPQGS L P L+ +Y +P+ G
Sbjct: 18 PAYLVRFIRSYSSNRVLPCESSEGVFRH-QVTGGVPQGSVLGPLLWNTMYDGILRLPLVG 76
Query: 310 WTELALFADDAAYFHVDNTPLDAQIETQRLLDTLPEWLRRWRLRANVGKTQALM 471
+E+ FADD A VD P A+ R + + WL L KT+A++
Sbjct: 77 RSEIVGFADDVALLVVDKYPGKAEEMCNRNIRAIEHWLSSMGLELAPEKTKAVL 130
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 39.5 bits (88), Expect = 0.002
Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 2/128 (1%)
Frame = +1
Query: 43 QYVAVVLLDMEKAFDKVWHQGMLYKLLTTTTIPRKILHVLKSFLEDRRAQVVVEGQVSRE 222
QYV +D + AFD V L +L + + + + +SF RRA V+ + E
Sbjct: 570 QYVLGTFVDFKGAFDNVEWSAALSRL---ADLGCREMGLWQSFFSGRRA-VIRSSSGTVE 625
Query: 223 FPMRAGVPQGSCLSPSLYAVYTNDM--PVRGWTELALFADDAAYFHVDNTPLDAQIETQR 396
P+ G PQGS P ++ + + + ++ + +L+ +ADD N+ + + +
Sbjct: 626 VPVTRGCPQGSISGPFIWDILMDVLLQRLQPYCQLSAYADDLLLLVEGNSRAVLEEKGAQ 685
Query: 397 LLDTLPEW 420
L+ + W
Sbjct: 686 LMSIVETW 693
>BT010243-1|AAQ23561.1| 672|Drosophila melanogaster RE42927p
protein.
Length = 672
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 325 LFADDAAYFHVDNTPLDAQIETQRLLDTLPEWLRRWR 435
++A FH+ +TP A + QRL + +W R W+
Sbjct: 547 MWARHLRIFHIAHTPCGASTQYQRLCERQWQWQRLWQ 583
>AE014134-2381|AAN10840.1| 672|Drosophila melanogaster CG31814-PA
protein.
Length = 672
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 325 LFADDAAYFHVDNTPLDAQIETQRLLDTLPEWLRRWR 435
++A FH+ +TP A + QRL + +W R W+
Sbjct: 547 MWARHLRIFHIAHTPCGASTQYQRLCERQWQWQRLWQ 583
>AE014296-1273|AAF50550.2| 478|Drosophila melanogaster CG8540-PA
protein.
Length = 478
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +1
Query: 190 QVVVEGQVSREFPMRAGVPQGSCLSPSLYAVYTNDM 297
QV+V Q+ ++FP A +P GS + +LY + N++
Sbjct: 362 QVIVGRQLKKDFPYNAELPCGSEIYINLYELQRNEV 397
>BT010210-1|AAQ23528.1| 711|Drosophila melanogaster RH61964p
protein.
Length = 711
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 239 ESRRVAASLLAFTPSTQMICPCAGGQNSHYSLTTPLI 349
E ++ LL P+ QMI C+GGQ S +I
Sbjct: 118 EKFKLLKELLQLPPARQMIKQCSGGQQRRLSFACAMI 154
>AE014134-965|AAN10554.1| 711|Drosophila melanogaster CG11147-PB,
isoform B protein.
Length = 711
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 239 ESRRVAASLLAFTPSTQMICPCAGGQNSHYSLTTPLI 349
E ++ LL P+ QMI C+GGQ S +I
Sbjct: 118 EKFKLLKELLQLPPARQMIKQCSGGQQRRLSFACAMI 154
>AE014134-964|AAF52284.2| 711|Drosophila melanogaster CG11147-PA,
isoform A protein.
Length = 711
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 239 ESRRVAASLLAFTPSTQMICPCAGGQNSHYSLTTPLI 349
E ++ LL P+ QMI C+GGQ S +I
Sbjct: 118 EKFKLLKELLQLPPARQMIKQCSGGQQRRLSFACAMI 154
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,116,768
Number of Sequences: 53049
Number of extensions: 449721
Number of successful extensions: 1584
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1548
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1742533632
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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