Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_L02
         (510 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal prote...    80   8e-16
U80452-4|AAB37860.1|  226|Caenorhabditis elegans Hypothetical pr...    31   0.49 
U28741-7|AAO38645.1|  721|Caenorhabditis elegans Synapse defecti...    29   1.5  
U28741-6|AAO21428.1|  942|Caenorhabditis elegans Synapse defecti...    29   1.5  
U28741-5|AAO38644.1|  987|Caenorhabditis elegans Synapse defecti...    29   1.5  
AF546880-1|AAN38752.1|  942|Caenorhabditis elegans axon identity...    29   1.5  
U97003-4|AAB52268.2|  370|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U40945-2|AAA81720.1|  445|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z82083-3|CAB04971.1|  756|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AF036705-9|AAO91724.1|  686|Caenorhabditis elegans Hypothetical ...    27   6.0  
Z81043-4|CAB02798.1|  179|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 30 protein.
          Length = 130

 Score = 80.2 bits (189), Expect = 8e-16
 Identities = 51/135 (37%), Positives = 69/135 (51%), Gaps = 5/135 (3%)
 Frame = +3

Query: 42  MQLHIRG--QSTHVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSEL- 212
           MQ+ + G   +TH LDV+   ++  IK  +        EE ++S     L +   + E  
Sbjct: 1   MQIFLLGLDNTTHTLDVDASTTLSAIKGVIGA-----GEEFSISYGSKVLSEELTLGECQ 55

Query: 213 --SSTELDLTVPLLGGKVHGSLARAGKVKGQTPXXXXXXXXXXXXXXXXXXIQYNRRFVN 386
             S + L +   LLGGKVHGSLARAGKV+ QTP                  +QY RR+VN
Sbjct: 56  IESLSTLSVNGRLLGGKVHGSLARAGKVRAQTPKVDKQDKKKKKRGRAFRRVQYTRRYVN 115

Query: 387 VVQTFGRRRGPNSNS 431
           V    G++RGPNSNS
Sbjct: 116 VASGPGKKRGPNSNS 130


>U80452-4|AAB37860.1|  226|Caenorhabditis elegans Hypothetical
           protein C16C8.4 protein.
          Length = 226

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +3

Query: 3   RGGCQSFLIRRYKMQLHIRGQS-THVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGA 179
           R  C++    + + Q+ ++    ++   ++ ++++ DIKN +    D+      LS  G 
Sbjct: 141 RKNCENRAAPKPEFQIFVKVLGVSYAFKIHREDTVFDIKNDIEHRHDIPQHSYWLSFSGK 200

Query: 180 PLEDSCLVSE 209
            LED C + +
Sbjct: 201 RLEDHCSIGD 210


>U28741-7|AAO38645.1|  721|Caenorhabditis elegans Synapse defective
           protein 1, isoformc protein.
          Length = 721

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +3

Query: 105 GDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSELSSTEL-DLTVPLLGGKVHGSLARA 281
           G ++ +  L A++ES  +   +    + D+ +++ L    L +L  PL+  ++HG L  A
Sbjct: 528 GSVEKKKMLRAELESNPLGTELAAESIPDTNVIACLIKDFLRELPEPLISPQIHGMLLEA 587

Query: 282 GKV 290
             V
Sbjct: 588 ASV 590


>U28741-6|AAO21428.1|  942|Caenorhabditis elegans Synapse defective
           protein 1, isoformb protein.
          Length = 942

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +3

Query: 105 GDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSELSSTEL-DLTVPLLGGKVHGSLARA 281
           G ++ +  L A++ES  +   +    + D+ +++ L    L +L  PL+  ++HG L  A
Sbjct: 726 GSVEKKKMLRAELESNPLGTELAAESIPDTNVIACLIKDFLRELPEPLISPQIHGMLLEA 785

Query: 282 GKV 290
             V
Sbjct: 786 ASV 788


>U28741-5|AAO38644.1|  987|Caenorhabditis elegans Synapse defective
           protein 1, isoforma protein.
          Length = 987

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +3

Query: 105 GDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSELSSTEL-DLTVPLLGGKVHGSLARA 281
           G ++ +  L A++ES  +   +    + D+ +++ L    L +L  PL+  ++HG L  A
Sbjct: 794 GSVEKKKMLRAELESNPLGTELAAESIPDTNVIACLIKDFLRELPEPLISPQIHGMLLEA 853

Query: 282 GKV 290
             V
Sbjct: 854 ASV 856


>AF546880-1|AAN38752.1|  942|Caenorhabditis elegans axon identity
           specification proteinSYD-1 protein.
          Length = 942

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +3

Query: 105 GDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSELSSTEL-DLTVPLLGGKVHGSLARA 281
           G ++ +  L A++ES  +   +    + D+ +++ L    L +L  PL+  ++HG L  A
Sbjct: 726 GSVEKKKMLRAELESNPLGTELAAESIPDTNVIACLIKDFLRELPEPLISPQIHGMLLEA 785

Query: 282 GKV 290
             V
Sbjct: 786 ASV 788


>U97003-4|AAB52268.2|  370|Caenorhabditis elegans Hypothetical
           protein F47C10.3 protein.
          Length = 370

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -2

Query: 167 RQSHLLTLNISKKPEAILDITDGFLTIHVKDV--RRLTSNVKLHFVSSYQERLTT 9
           R+  L TL ++    AIL+ TD  +T   KDV   RL     L F+++ + RL T
Sbjct: 209 REFSLKTLVLNSAMRAILNKTDRVMTPDGKDVYPDRLLQMFSLDFLNNIRSRLAT 263


>U40945-2|AAA81720.1|  445|Caenorhabditis elegans Hypothetical
           protein F10D7.2 protein.
          Length = 445

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 509 SSFFFFLLKQKRCYI-GIVVLFTELILRVRVGSTTA 405
           SS FF+LL    CYI G  +LF  LIL  R+ +  A
Sbjct: 406 SSTFFWLLGATTCYIMGAFLLFIPLILLKRLENPAA 441


>Z82083-3|CAB04971.1|  756|Caenorhabditis elegans Hypothetical
           protein ZK1010.5 protein.
          Length = 756

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +1

Query: 337 GPDVLSAGSNTTGDS*TLSRPSAAVVDPTLTRKINSVNNTTMP 465
           GP      S TT D    + P   +VDP  + +  S  +T +P
Sbjct: 525 GPATAKDPSTTTSDPVVQTNPPVVIVDPATSEEPLSTASTALP 567


>AF036705-9|AAO91724.1|  686|Caenorhabditis elegans Hypothetical
           protein F37C4.2 protein.
          Length = 686

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 361 ILRLARPVLFFFFCCFSTLGVWPLTLPA 278
           IL+ ++PV +F       + V+P TLPA
Sbjct: 257 ILKFSQPVSYFALVILLAINVFPFTLPA 284


>Z81043-4|CAB02798.1|  179|Caenorhabditis elegans Hypothetical
           protein C29F3.5 protein.
          Length = 179

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 340 VLFFFFCCFSTLGVWPLTLPARARDPCTLP 251
           ++F FFC FS  G  P+T P    +P  +P
Sbjct: 6   IIFAFFCMFSVEGCIPMTPP---EEPVVVP 32


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,342,093
Number of Sequences: 27780
Number of extensions: 211838
Number of successful extensions: 628
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)