Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_L01
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine 5',5'''-p1,p6-hexapho...    29   0.60 
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe...    27   2.4  
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    26   3.2  
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    26   3.2  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    26   4.2  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   5.6  
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy...    25   5.6  
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce...    25   5.6  

>SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine
           5',5'''-p1,p6-hexaphosphate hydrolase Aps1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +1

Query: 382 RRAACICVRSDAESEVLLVTSSRRPDNWIXXXXXXXXXXXXXXTAMREVLEEAGV 546
           R AA +   S  + +VLLV+S+++  +W+               A+RE  EE G+
Sbjct: 42  RLAAGVVALSADKRKVLLVSSAKKHPSWVVPKGGWEADESVQQAALREGWEEGGL 96


>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 504

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 21 SKPISIFAKKENVRHH 68
          SKP+S F KKE  +HH
Sbjct: 36 SKPVSPFFKKERYKHH 51


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 79  AHVGWCLTFSFFAKIEIGL 23
           A++GW  TFSFF+ I  G+
Sbjct: 462 AYLGWNCTFSFFSDIMYGV 480


>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 133 ATIRAIFQL*LAFDRVFRAHVGWCLTF 53
           + + A+F     F+RV RA VGW L F
Sbjct: 323 SAVAALFLDWQRFNRVIRARVGWGLVF 349


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 372 LLVVYSNRIRLLLNHFLCKHER 307
           +LVVY NR R LLN +L ++ +
Sbjct: 868 ILVVYLNRERTLLNFYLIENSK 889


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 337  EKPNSIRIYDEEGFRRRAACICVRSDAESEVLL 435
            EK NS+  Y+EE      A +    ++E+E+ L
Sbjct: 1624 EKNNSLHAYEEEALNEEQASLVFLENSEAELPL 1656


>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 516

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 241 LIINKRHSRGILL*MYPFSTLKLHNVHVIS 152
           +I ++RH  G L  + PF   +LHN+ V++
Sbjct: 379 VIESRRHFSGELFSVSPFLARRLHNLFVLN 408


>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 386 RRRNPSSSYILIELGFSLTIFYVNTNETDDHKRKADIK 273
           + + P++   L E G SL++  +NT+   DH  K  I+
Sbjct: 115 KEKEPANLVPLGESGSSLSVSTINTSNLPDHDYKTIIQ 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,990,130
Number of Sequences: 5004
Number of extensions: 36642
Number of successful extensions: 119
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)