Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_L01
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0451 + 3461229-3461561,3462043-3462290,3462425-3462716,346... 31 0.61
02_05_0651 + 30644241-30644615,30644751-30644858 30 1.1
01_06_0677 - 31104736-31104897,31105046-31105234,31105313-311054... 29 3.2
08_02_0444 - 17209447-17209491,17210559-17210849,17211655-172116... 28 4.3
04_03_1017 + 21747044-21748051 28 5.6
11_06_0207 + 21214631-21216121 27 7.5
06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-19... 27 9.9
03_05_1094 - 30348366-30348467,30348571-30348753,30348833-303489... 27 9.9
03_02_0757 - 10940993-10941112,10941218-10941418,10941661-109417... 27 9.9
01_07_0248 + 42261373-42261609,42261733-42261905,42261986-422620... 27 9.9
>03_01_0451 +
3461229-3461561,3462043-3462290,3462425-3462716,
3463057-3463209,3463288-3463674
Length = 470
Score = 31.1 bits (67), Expect = 0.61
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2
Query: 460 CQDVAMKSPEAPPIRRRNARRYTPRVAEIPPRRIF 356
C DV + P+ PP R Y R+A PP + F
Sbjct: 79 CVDVVLSVPQLPPAPREEREAYMERLAASPPDQKF 113
>02_05_0651 + 30644241-30644615,30644751-30644858
Length = 160
Score = 30.3 bits (65), Expect = 1.1
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = +1
Query: 328 MVKEKPNSIRIYDEEGFRRRAACIC--VRSDAESEVLLVTSSRRPDNWIXXXXXXXXXXX 501
+V + ++ Y G R CI VRS E EVL++T S++ +
Sbjct: 4 LVARQGRELQRYTSAGGRIVVGCIPYRVRSGGEMEVLVIT-SQKGHGMMFPKGGWELDES 62
Query: 502 XXXTAMREVLEEAGV 546
A RE LEEAGV
Sbjct: 63 MDEAARREALEEAGV 77
>01_06_0677 -
31104736-31104897,31105046-31105234,31105313-31105470,
31105558-31105648,31105787-31105961,31106065-31106204,
31106293-31106511,31106589-31106718,31107163-31107229,
31107347-31107441,31107535-31107606,31107681-31107736,
31107995-31108060,31108151-31108264,31108787-31109092
Length = 679
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 490 AQRHRLARSSCQDVAMKSPEAPPIRRRN-ARRYTPRVA 380
A+R R A+ + A +P PP RRR ARR P VA
Sbjct: 8 ARRAREAQENPAAAAAAAPAPPPARRRRAARRKEPEVA 45
>08_02_0444 -
17209447-17209491,17210559-17210849,17211655-17211672,
17211798-17211969,17212523-17212630,17212940-17213382
Length = 358
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = -1
Query: 434 RSTSDSASERTQIHAARRRNPSSSYILIELGFSLTIFYVNTNET 303
+S +D S++ +HA +NP+SS + +G S+ IF+ N++
Sbjct: 297 KSNADRISQKNTVHAHHVQNPASSGM---VGQSVIIFHAAENDS 337
>04_03_1017 + 21747044-21748051
Length = 335
Score = 27.9 bits (59), Expect = 5.6
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = -2
Query: 493 PAQRHRLARSSCQDVAMKSPEAPPIRRRNARRYTPRVAEIPPRR 362
PA R A +S D +PE+PP RR + Y+P PPRR
Sbjct: 164 PASPSRRAAASSPDY---TPESPPRRRAASPDYSP---STPPRR 201
>11_06_0207 + 21214631-21216121
Length = 496
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 328 MVKEKPNSIRIYDEEGFRRRAACICVRSDAESEVLLVTSSRRPDNW 465
++K P I ++D E RR+ + S S V + S + D W
Sbjct: 422 LIKNGPRDIGVFDLENRRRKKTISPIWSSWPSPVWITPSIAKADGW 467
>06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-196342,
196685-196780,197248-197399,198683-198823,199068-199319,
199463-199603,199686-200003,200146-200232,201025-202006,
202091-202179,202968-203072,203155-204306,204844-205359,
205455-205650,206299-207182
Length = 1979
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = -3
Query: 432 KHLRFGVGTHADTRRASPKSLLVVYSNRIRLLLNHFLCKHERNRRSQTKS 283
+HLR G ++ R A+ K ++ ++ + LNH C+H + + Q+ S
Sbjct: 1254 EHLRKG-HIDSEDRDATVKLIIEWFTLLLYAFLNHMRCQHNKLKMQQSTS 1302
>03_05_1094 - 30348366-30348467,30348571-30348753,30348833-30348934,
30349617-30349967,30350049-30350276,30350353-30350509,
30351189-30351370,30351443-30351866,30351949-30352892,
30353509-30353773,30354558-30355120
Length = 1166
Score = 27.1 bits (57), Expect = 9.9
Identities = 7/21 (33%), Positives = 14/21 (66%)
Frame = -1
Query: 86 ISSPCWMVPDVFFLCENRNRF 24
+ +PCWM P+V ++N++
Sbjct: 1016 VGTPCWMAPEVLRAMRDKNQY 1036
>03_02_0757 -
10940993-10941112,10941218-10941418,10941661-10941795,
10941948-10942088,10942214-10942405,10942624-10942748,
10942828-10942903,10943024-10943173,10943467-10943856,
10944078-10944227,10944430-10944710,10945034-10945230,
10945836-10946035,10946422-10946469,10946566-10946688,
10946771-10946882,10946988-10947103,10947526-10947660
Length = 963
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 463 SCQDVAMKSPEAPPIRRRNARRYTPRVAEIPPR 365
SC+ + + P P RR +RY +AEI P+
Sbjct: 11 SCESMCVCCPALRPSSRRPVKRYKKLLAEIFPK 43
>01_07_0248 + 42261373-42261609,42261733-42261905,42261986-42262058,
42262148-42262282,42262352-42262562,42262886-42263034,
42263169-42263267,42263821-42263989,42264176-42264308,
42264600-42264694,42264774-42264882,42265136-42265295,
42265433-42265594,42265814-42265985,42266254-42266402,
42266914-42266951,42267779-42267839,42267913-42268155,
42268233-42268315,42269521-42269609,42270449-42270495,
42270576-42270656,42270737-42270899,42271077-42271267,
42271691-42271762
Length = 1097
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -2
Query: 493 PAQRHRLARSSCQDVAMKSPEAPPIRRRNARRYTPRVAEIPPRR 362
P +R R + P++PPIRRR A R + PPRR
Sbjct: 1027 PNRRIESPRRQPDPSPRRRPDSPPIRRR-ADASPVRRGDTPPRR 1069
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,678,853
Number of Sequences: 37544
Number of extensions: 232949
Number of successful extensions: 591
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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