Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_K23
         (412 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   0.58 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   4.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   7.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.2  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 24.2 bits (50), Expect = 0.58
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 357 PFSSIPANITATPNGLDIAVPLSSSL 280
           P SS P +   +P+ LD+A+P+  +L
Sbjct: 437 PPSSNPVSPVPSPDPLDLAIPVRETL 462


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -3

Query: 293 YHHHCHQTE 267
           +HHH HQT+
Sbjct: 351 HHHHHHQTQ 359


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 146 LMADSRTLVERARVECQNH 202
           L  D   LVE   ++C NH
Sbjct: 312 LKGDLEGLVEGVIIDCSNH 330


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 200  HWFVYNERMSVESCA 244
            H F+Y+E    E CA
Sbjct: 1738 HSFMYHEHAMTEGCA 1752


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 200  HWFVYNERMSVESCA 244
            H F+Y+E    E CA
Sbjct: 1734 HSFMYHEHAMTEGCA 1748


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 10/45 (22%), Positives = 18/45 (40%)
 Frame = -3

Query: 260 DWTRPAHKTLHSFSHCTQTSDSGIPHEHAQLMSWNQP*DQTQHKR 126
           D ++P H+ LH        + +    +  Q     QP  Q Q ++
Sbjct: 805 DQSQPPHQQLHHHQSTHPQAQAQAQPQQQQQQQQQQPQQQQQQQQ 849


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,846
Number of Sequences: 438
Number of extensions: 2802
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)