Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_K19
         (480 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0390 + 17573653-17574089,17574250-17574280,17574397-17575134     30   1.1  
08_01_0800 - 7738035-7738381,7739951-7740521                           29   2.0  
07_01_1074 - 9599465-9599545,9599632-9599690,9600070-9600143,960...    28   3.4  
04_04_1109 + 30965143-30965312,30965406-30965586,30965669-309661...    28   4.5  
12_02_0712 + 22426945-22426981,22427517-22427623,22427707-224279...    27   6.0  

>07_03_0390 + 17573653-17574089,17574250-17574280,17574397-17575134
          Length = 401

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
 Frame = +1

Query: 187 RIFSHFRILAEDVTNFYERFISNGGRRRRGD------SPLLSPTGIYNFTVLVSQQRISY 348
           ++ + F +L   VT F   F   GG R  GD      +PLL+  G Y F   +    +++
Sbjct: 210 QVLALFSVLITTVT-FASVFTLPGGYRSAGDGGSAAGTPLLAGRGCYAFDAFILSDALAF 268

Query: 349 ICSLLTPYI*CY 384
           +C  +   +  Y
Sbjct: 269 VCYFMATSVLLY 280


>08_01_0800 - 7738035-7738381,7739951-7740521
          Length = 305

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 275 ATHLYCHLPEFTTLQSWCLNNAFLIF 352
           ATH +  LP FT   S C++  +L+F
Sbjct: 59  ATHRWVQLPPFTEYDSLCISAEYLVF 84


>07_01_1074 -
           9599465-9599545,9599632-9599690,9600070-9600143,
           9600797-9600996,9601074-9601365,9601665-9602411,
           9602653-9602696,9602714-9602827,9603590-9603838,
           9603922-9603927
          Length = 621

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 247 ISNGGRRRRGDSPLLSPTGIYNFTVLVSQQRISYICSLLTPY 372
           +++ GRR RG  P   P+G+Y  T +      +   S LTPY
Sbjct: 16  VTSSGRRARG--PTRMPSGMYTITAVDEDGNPTSPKSALTPY 55


>04_04_1109 +
           30965143-30965312,30965406-30965586,30965669-30966100,
           30966176-30966277,30966376-30966681,30966755-30966817,
           30967758-30967856
          Length = 450

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +1

Query: 265 RRRGDSPLLSPTGIYNFTVLVSQQRISYICSLLTP--YI*CYNSCGGN 402
           R+  D P+L+P G  N+TV  S  +++   SLL    Y   Y S G N
Sbjct: 43  RKEADRPVLTPCGAENWTVHPSCLKVTTTLSLLIKQNYPGTYVSVGTN 90


>12_02_0712 +
           22426945-22426981,22427517-22427623,22427707-22427955,
           22429309-22429937,22430013-22430192,22430267-22430555,
           22431183-22431247,22431379-22431471,22431811-22431897,
           22431971-22432071,22432571-22432692
          Length = 652

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 268 RRGDSPLLSPTGIYNFTVLVSQQRISYICSLLTPY 372
           RRG  P   P G+Y  T L +    +   S LTPY
Sbjct: 67  RRGRGPTKMPIGLYTITALDADGNPTAPESALTPY 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,800,040
Number of Sequences: 37544
Number of extensions: 196988
Number of successful extensions: 300
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)