Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_K19
         (480 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82276-8|CAL69741.1|  281|Caenorhabditis elegans Hypothetical pr...    31   0.57 
U23180-3|AAC46729.2|  856|Caenorhabditis elegans Hypothetical pr...    28   3.1  
Z83744-4|CAB06040.4|  735|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z69883-1|CAA93743.1|  829|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AF016686-15|AAB66231.3|  572|Caenorhabditis elegans C-type lecti...    27   9.3  

>Z82276-8|CAL69741.1|  281|Caenorhabditis elegans Hypothetical
           protein K03D3.14 protein.
          Length = 281

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +2

Query: 299 PEFTTLQSWCLNNAFLIFVVCLLHIYNVIIVVVVTRSFL-YIYNIYS*F*MTNLI 460
           P  T+ +   LN  +++++V   H+   I + VVTR  L Y Y IY+ F +  L+
Sbjct: 107 PYLTSARDGFLNKIWILYIV---HVLKEISIYVVTRRILKYQYKIYNPFSILGLV 158


>U23180-3|AAC46729.2|  856|Caenorhabditis elegans Hypothetical
           protein C28F5.4 protein.
          Length = 856

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 205 RILAEDVTNFYERFISNGGRRRR 273
           RI  E+V NF++R I  GG  RR
Sbjct: 825 RITKEEVINFFDRKIRKGGAERR 847


>Z83744-4|CAB06040.4|  735|Caenorhabditis elegans Hypothetical
           protein C06A12.4 protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = +2

Query: 311 TLQSWCLNNAFLIFVVCLLHIYNVIIVVVVTRSFLYIYNIYS*F*MTNLITLV 469
           T+ +WC   +  IF  CL++    II + ++R   +I  I+  + M  LIT++
Sbjct: 77  TIVAWCGWCSNYIFFPCLMNAILYIISLSLSRDTTFILFIF--YQMNKLITVI 127


>Z69883-1|CAA93743.1|  829|Caenorhabditis elegans Hypothetical
           protein C27C12.7 protein.
          Length = 829

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 435 EYILYMYKKLRVTTTTIITLYIWSKQTTNI 346
           EY    Y K  V   T++T YIW  +   I
Sbjct: 301 EYFELPYPKAGVQNNTLVTQYIWDSENHKI 330


>AF016686-15|AAB66231.3|  572|Caenorhabditis elegans C-type lectin
           protein 43 protein.
          Length = 572

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 347 IFVVCLLHIYNVIIVVVVT 403
           IF++CLLHIY    V  +T
Sbjct: 3   IFIICLLHIYATFSVSQIT 21


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,916,045
Number of Sequences: 27780
Number of extensions: 194586
Number of successful extensions: 426
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)