Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_K18
(519 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po... 46 4e-06
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 29 0.32
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch... 28 0.73
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 27 1.3
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 27 1.7
SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyc... 27 2.2
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 26 3.9
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol... 25 5.1
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos... 25 5.1
SPAC8C9.05 |||D-Tyr-tRNA deacylase |Schizosaccharomyces pombe|ch... 25 5.1
SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|c... 25 5.1
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c... 25 6.8
SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2... 25 9.0
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.0
>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 639
Score = 45.6 bits (103), Expect = 4e-06
Identities = 20/65 (30%), Positives = 39/65 (60%)
Frame = +1
Query: 217 LLVQSLVKELCSLLEKDTLKANQLYNTICEKLHSMNLIDDSYAMGEFEAMRSQYQRALYQ 396
+L+ +L++ C L + + K+ +L+ IC L + ++++ Y + E A+RS YQ AL+
Sbjct: 41 MLLTALLENFCQLYDNNPAKSKRLFALICHTLQKIGILEEEY-IEELAAVRSNYQDALHH 99
Query: 397 LVTVA 411
L+ A
Sbjct: 100 LILQA 104
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 29.5 bits (63), Expect = 0.32
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = +1
Query: 172 HQIDLINGTTT--TPISLLVQSLVKELCSLLEKDTLKANQLYNTICEKLHS--MNLIDDS 339
HQ D+I + PI L +++L++ + SLL K+T + +NT +L+S + ++ D
Sbjct: 654 HQADMITMQSLYYCPIEL-IENLLRAITSLLPKNTSNLSDEFNTKLYRLNSILLTVVMDI 712
Query: 340 YAMGEFEAMRS 372
Y + +RS
Sbjct: 713 YFIVPLHDIRS 723
>SPAC1006.02 |||WD repeat protein, human GNB1L
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 368
Score = 28.3 bits (60), Expect = 0.73
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +1
Query: 97 LATIKNFDFGVKINSQHESVFHQSIHQIDLINGTTTTPISLLVQSLVKELCSLLEKDTL 273
LA ++N+ ++ S F SIH ++N T P S QS + LC+ L + L
Sbjct: 98 LAELQNYGPEASSETEKSSAFI-SIHSNIVVNSLTFCPFSYSPQSKIVVLCNTLNFEEL 155
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 27.5 bits (58), Expect = 1.3
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = +1
Query: 82 DKWKALATIKNFDFGVKINSQHES---VFHQSIHQIDLINGTTTTPISLLVQSLVKELCS 252
D+ L +KNF + Q + V H + +Q+DL GTT+ S ++ +++K + +
Sbjct: 577 DETYLLKILKNFQLRYHDSLQLQEKCDVLHTTFNQLDLYVGTTSVGKSSVLDNILKRIFN 636
Query: 253 LL 258
L
Sbjct: 637 SL 638
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 27.1 bits (57), Expect = 1.7
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Frame = +1
Query: 190 NGTTTTPISLLVQSLVKELCSLLEKDTLKANQLYNTICEKLHSMNLID-------DSYAM 348
+ TT + + LV E +++KD + L ICEK+ ++++D + AM
Sbjct: 100 DSTTHNRVRSRIAVLVNEWAEIMKKDPNMS--LMQDICEKIRKLDIVDLRAPKKPEKEAM 157
Query: 349 GEFEAMRSQ 375
E E R +
Sbjct: 158 NELELKREE 166
>SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 422
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +1
Query: 34 KLTNKTSKKKMDDGKQDKWKALATIKNFDFGVKINSQHESVFHQSIHQI 180
+L NK K+ +D+GK ++ + F G+ N+ H HQ+
Sbjct: 264 ELVNKYLKRAVDNGKDEEARDNMAYAEFLGGMAFNNASLGYVHAMAHQL 312
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.8 bits (54), Expect = 3.9
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Frame = +1
Query: 127 VKINSQHESVFHQSIHQIDLINGTT-TTPISLLVQSLVKELCSLLEKDTLKANQLYNTIC 303
+ S+ S Q + +I +N T +TPI ++ + K LC E L+ N C
Sbjct: 214 IYFTSRTHSQLQQLVQEIKKLNNQTFSTPIRVVSLASRKNLCINNEVRKLRPTSALNEKC 273
Query: 304 EKL----HSMNLIDDSYAMGEF 357
+L H + D+ + +F
Sbjct: 274 IELQGSAHKCPFLQDNTQLWDF 295
>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 797
Score = 25.4 bits (53), Expect = 5.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 399 GDSGYWFRNSYKSISNMAYSS 461
GDS YW RN K+ S+ A+ S
Sbjct: 562 GDSAYWTRNG-KTFSSKAFDS 581
>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 25.4 bits (53), Expect = 5.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 218 YLFNHLSKNCVPF*KKTP*KLISYTIQYVK 307
+LFNH+ + VPF + K+ S+ I Y +
Sbjct: 152 HLFNHVMDSVVPFDEAKKFKVRSFPINYAE 181
>SPAC8C9.05 |||D-Tyr-tRNA deacylase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 149
Score = 25.4 bits (53), Expect = 5.1
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
Frame = +1
Query: 34 KLTNKTSKKKMDDGKQDKWKA--------LATIKNFDFGVKINSQHESVFHQSI 171
KL+NK K K+ D + WK+ + + F ++N + FH+S+
Sbjct: 44 KLSNKILKLKLFDNAEQPWKSTIADIQGEILCVSQFTLHARVNKGAKPDFHRSM 97
>SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 169
Score = 25.4 bits (53), Expect = 5.1
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Frame = +1
Query: 289 YNTICEKLHSMN-----LIDDSYAMGEFEAMRSQYQRALYQ 396
YN+I +L S+N + YA+ EF+A+ +++ L Q
Sbjct: 80 YNSINAELESVNSKISSISSQEYALEEFQALSQNFEKNLVQ 120
>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 594
Score = 25.0 bits (52), Expect = 6.8
Identities = 17/55 (30%), Positives = 35/55 (63%)
Frame = +1
Query: 313 HSMNLIDDSYAMGEFEAMRSQYQRALYQLVTVATGSEIPINLSATWPILQXSGLD 477
+S++L+ S ++ + ++ Y+ ++ V A GSEIP+N++ +P+L+ GLD
Sbjct: 169 NSLDLMH-SVSVSDIWPLKVNYETSIPSKV-YAIGSEIPVNIT-LYPLLK--GLD 218
>SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 283 QLYNTICEKLHSMNLIDDSYAMG 351
Q+Y +C HS+NLI + +G
Sbjct: 96 QVYREVCSACHSLNLIAWRHLVG 118
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = +1
Query: 70 DGKQDKWKALATIKNFDFGVKINSQHESVFHQSIHQ 177
+GK + ++K D +SQH+ FH+ + Q
Sbjct: 107 NGKSRDTEKPPSMKEKDLSSNSSSQHDKAFHERVDQ 142
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,102,393
Number of Sequences: 5004
Number of extensions: 42233
Number of successful extensions: 126
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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