Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_K18
         (519 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0069 + 28148713-28148829,28149205-28149327,28149372-28149824     31   0.73 
07_01_0046 - 363312-363426,363514-363647,363739-363828                 28   3.9  
08_02_0544 + 18445810-18445995,18446894-18447053,18448186-184483...    27   6.8  
08_02_0363 + 16238710-16240224,16240537-16240545                       27   6.8  
01_03_0145 - 13116302-13116958,13117365-13117430,13117786-131180...    27   6.8  

>11_08_0069 + 28148713-28148829,28149205-28149327,28149372-28149824
          Length = 230

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
 Frame = +1

Query: 82  DKWKALATI---KNF--DFGVKINSQHESVFHQSIHQIDLINGTTTTPISLLVQSLVKEL 246
           D W A A+    K+F  D    +++ H+S  H  +  +DL++G   +PI  L   LV   
Sbjct: 164 DSWVAFASASRAKHFVLDLSPAVHTNHQSEEHMYVFPVDLLDGQNGSPIISLRLGLV--- 220

Query: 247 CSLLEKDTL 273
           C  L  D L
Sbjct: 221 CLKLPSDFL 229


>07_01_0046 - 363312-363426,363514-363647,363739-363828
          Length = 112

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 34 KLTNKTSKKKMDDGKQDKWKAL 99
          KL NK  KKK+ D +Q  W A+
Sbjct: 31 KLANKMMKKKLQDEQQQDWDAI 52


>08_02_0544 +
           18445810-18445995,18446894-18447053,18448186-18448386,
           18448474-18448538,18448697-18448761,18448784-18448874,
           18448965-18449051,18449204-18449254,18449604-18449825,
           18449987-18450080,18450159-18450299,18450391-18450476
          Length = 482

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 90  PFVLFTIIHFFFASFVGQFVVKSL 19
           P+ LF  +  FFA+ +GQ +V+ L
Sbjct: 406 PYALFFTVVAFFAAIIGQHIVRKL 429


>08_02_0363 + 16238710-16240224,16240537-16240545
          Length = 507

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 5/116 (4%)
 Frame = +1

Query: 178 IDLINGTTTTPISLLVQSLVKELCSLLEKDTLK-----ANQLYNTICEKLHSMNLIDDSY 342
           +D ING      S+  + LV+  CS +E++ L        Q +N   E +H ++L+    
Sbjct: 129 LDKINGIIGW--SVTGKPLVEVFCSYIEREVLNWYGYAIGQRWNVTPEPIHLLHLL---- 182

Query: 343 AMGEFEAMRSQYQRALYQLVTVATGSEIPINLSATWPILQXSGLDWSRYHREFEEL 510
                  +  Q  RAL     VATG+ +P    A    ++ S  + +R +    E+
Sbjct: 183 ---HILLIGCQKPRALTHTHQVATGAAVPTEPHAARSRIEASSANITRQNETAIEM 235


>01_03_0145 -
           13116302-13116958,13117365-13117430,13117786-13118065,
           13118283-13119028
          Length = 582

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +1

Query: 112 NFDFGVKINSQHESVFHQSIH 174
           NFDFG   ++Q +++F+ S+H
Sbjct: 17  NFDFGKSFSAQVQNLFNSSVH 37


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,377,872
Number of Sequences: 37544
Number of extensions: 230732
Number of successful extensions: 495
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)