Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_K18
         (519 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023810-4|CAD59138.1|  384|Caenorhabditis elegans Hypothetical ...    28   3.5  
AL008881-3|CAD59164.1|  384|Caenorhabditis elegans Hypothetical ...    28   3.5  
AL008881-1|CAA15517.2|  343|Caenorhabditis elegans Hypothetical ...    28   3.5  
U32305-8|AAK18853.4|  492|Caenorhabditis elegans Regulator of g ...    28   4.6  
Z92773-3|CAB07129.3|  267|Caenorhabditis elegans Hypothetical pr...    27   6.1  
Z75554-11|CAA99961.1|  301|Caenorhabditis elegans Hypothetical p...    27   6.1  

>AL023810-4|CAD59138.1|  384|Caenorhabditis elegans Hypothetical
           protein Y9C2UA.1b protein.
          Length = 384

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -1

Query: 177 LMYTLMKDRFMLAIDFYTKIKVFNSS*CFPFVLFTIIHFFFASF 46
           LM  L    FM  + +Y  I +FN +    F  FT I+F F  F
Sbjct: 178 LMIFLYYAHFMDIVWWYEPIDLFNLATYLIFTTFTFIYFLFCLF 221


>AL008881-3|CAD59164.1|  384|Caenorhabditis elegans Hypothetical
           protein Y9C2UA.1b protein.
          Length = 384

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -1

Query: 177 LMYTLMKDRFMLAIDFYTKIKVFNSS*CFPFVLFTIIHFFFASF 46
           LM  L    FM  + +Y  I +FN +    F  FT I+F F  F
Sbjct: 178 LMIFLYYAHFMDIVWWYEPIDLFNLATYLIFTTFTFIYFLFCLF 221


>AL008881-1|CAA15517.2|  343|Caenorhabditis elegans Hypothetical
           protein Y9C2UA.1a protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -1

Query: 177 LMYTLMKDRFMLAIDFYTKIKVFNSS*CFPFVLFTIIHFFFASF 46
           LM  L    FM  + +Y  I +FN +    F  FT I+F F  F
Sbjct: 137 LMIFLYYAHFMDIVWWYEPIDLFNLATYLIFTTFTFIYFLFCLF 180


>U32305-8|AAK18853.4|  492|Caenorhabditis elegans Regulator of g
           protein signalingprotein 5 protein.
          Length = 492

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 25/117 (21%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
 Frame = +1

Query: 31  NKLTNKTSKKKMDDGKQDKWKALATIKNFDFGVKINSQHESVFHQSIHQIDLINGTTTTP 210
           +KL+    +K   D  QD  K+L   + FD          SV+++  H++++++   +  
Sbjct: 164 DKLSASPLQKSCFDEAQDFVKSLFEYRYFD------EFQNSVYYKK-HELEVLSDGCSLA 216

Query: 211 ISLLVQSLVKELCSLLEKDTLKANQLYNTICEKLHS-MNLIDDSYAMGEFEAMRSQY 378
             L VQ L+      +++        +   C+   + ++L++DS A+G+  A+  +Y
Sbjct: 217 DILKVQPLLLSFLEFIKEKEDHDTIQFLLGCDSFEANLDLMEDSEALGDAMALYEKY 273


>Z92773-3|CAB07129.3|  267|Caenorhabditis elegans Hypothetical
           protein W08E3.4 protein.
          Length = 267

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 22/94 (23%), Positives = 41/94 (43%)
 Frame = +1

Query: 103 TIKNFDFGVKINSQHESVFHQSIHQIDLINGTTTTPISLLVQSLVKELCSLLEKDTLKAN 282
           TI   +  V+I S+  + FH ++    +I       +  ++ +L K   +LLE +  +A 
Sbjct: 139 TIMKIESAVEI-SKTATDFHTALDASSVIGSDRVDQLKSIL-NLTKSDTALLESNITQAK 196

Query: 283 QLYNTICEKLHSMNLIDDSYAMGEFEAMRSQYQR 384
           QL  T+  +L     + D Y   +   +   Y R
Sbjct: 197 QLKITLDAQLQQRKALVDEY-KSKLTVLEGSYMR 229


>Z75554-11|CAA99961.1|  301|Caenorhabditis elegans Hypothetical
           protein ZC455.8a protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = -1

Query: 171 YTLMKDRFMLAIDFYTKIKVFNSS*CF----PFVLFTIIHFFFASFVGQFVVKSLFFVSS 4
           Y L K RF++ I +   + ++  S       PF+LF     F A+ +   VV + FF+ +
Sbjct: 45  YHLFKIRFIVDICYSLTVSIYYFSLIVSYISPFILFQYKSLFIATLLSSNVVSTRFFLGA 104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,415,609
Number of Sequences: 27780
Number of extensions: 230752
Number of successful extensions: 559
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)