Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_K18
         (519 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    26   0.27 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                26   0.27 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.35 

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 25.8 bits (54), Expect = 0.27
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +1

Query: 94  ALATIKNFDFGVKINSQHESVFHQSIHQIDLINGTTT 204
           +LAT K+F   +K NSQ E    + + ++D + G+TT
Sbjct: 557 SLATSKSF---IKANSQTEVSNSKKLDRLDSLRGSTT 590


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.8 bits (54), Expect = 0.27
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -3

Query: 409 PLSPVDTGLSDIDSS 365
           P SP D+G+SD++SS
Sbjct: 242 PASPADSGVSDVESS 256


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.4 bits (53), Expect = 0.35
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 409 PLSPVDTGLSDIDSSWPQILPLHMNHL 329
           P+SP++   S + SSWP ++PL +  L
Sbjct: 426 PISPLNDWYS-LASSWPALVPLALGFL 451


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,986
Number of Sequences: 438
Number of extensions: 2577
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)