Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_K17
(549 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 145 4e-36
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 51 1e-07
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 45 8e-06
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 43 3e-05
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 42 5e-05
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 41 1e-04
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 41 1e-04
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 40 2e-04
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 39 6e-04
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 38 7e-04
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 38 7e-04
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 38 0.001
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 38 0.001
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 38 0.001
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 38 0.001
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 36 0.004
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 36 0.005
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 35 0.007
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 35 0.009
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 35 0.009
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 35 0.009
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 34 0.016
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 33 0.021
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 33 0.021
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 31 0.085
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 30 0.26
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 29 0.34
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 28 1.0
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 28 1.0
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 27 1.8
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 2.4
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch... 26 3.2
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 26 3.2
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 26 3.2
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 4.2
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 25 7.3
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 25 7.3
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 25 9.7
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 25 9.7
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 25 9.7
SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase YakC|Schizo... 25 9.7
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 145 bits (351), Expect = 4e-36
Identities = 77/170 (45%), Positives = 98/170 (57%)
Frame = +2
Query: 5 EARVYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKEL 184
E R++VG +P D+ FFKG+G+I D + NG+GFVE ED RDA D V + GKE
Sbjct: 3 ETRLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQGKEF 62
Query: 185 LGERVVVEPARGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPPTRTEYRLIVENLS 364
+G R+VVEPARG P RT +RLIVENLS
Sbjct: 63 MGSRIVVEPARG----------------ERRRRENFRESAASKYPRPRRTGFRLIVENLS 106
Query: 365 SRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDG 514
+SWQDLKD MR+AGE T+ DAH+++ GVVEF+T DMR A+ L+G
Sbjct: 107 EDVSWQDLKDVMRKAGEPTFTDAHRENPGAGVVEFSTEEDMRNALTSLNG 156
Score = 26.6 bits (56), Expect = 2.4
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +2
Query: 11 RVYVGGLPFGVRERDLEKFFKGFGR--IRDILIKN-GYGFVEFEDYRDADDAVYELNGKE 181
R+ V L V +DL+ + G D +N G G VEF D +A+ LNG+
Sbjct: 99 RLIVENLSEDVSWQDLKDVMRKAGEPTFTDAHRENPGAGVVEFSTEEDMRNALTSLNGEV 158
Query: 182 LLGERVVV 205
+ G+ V +
Sbjct: 159 IKGQAVTL 166
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 51.2 bits (117), Expect = 1e-07
Identities = 44/183 (24%), Positives = 68/183 (37%), Gaps = 11/183 (6%)
Frame = +2
Query: 5 EARVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN-------GYGFVEFEDYRDADDAVY 163
E RVYVG L + VR +L++F G + + I N G +E+ +A A+
Sbjct: 65 ERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIK 124
Query: 164 ELNGKELLGERVVVEPARGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPPTRTEYR 343
L+ ++ +G V + R + Y
Sbjct: 125 TLSNQKFMGRLVYIREDREQNARFGSSSVSPSASSNGKDSEPDRQLFVGNVSSISNPLYS 184
Query: 344 LIVENLSSRISWQDLKDYMRQAGEVTYADAHK----QHRNEGVVEFATHSDMRAAIEKLD 511
L + WQDLKD RQAG V AD + R G+V ++ + AI+ L
Sbjct: 185 FPRTLLPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLH 244
Query: 512 GTE 520
T+
Sbjct: 245 NTD 247
Score = 37.5 bits (83), Expect = 0.001
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Frame = +2
Query: 326 TRTEYRLIVENLSSRISWQDLKDYMRQAGEVTYAD----AHKQHRNEGVVEFATHSDMRA 493
T+ E R+ V NLS ++ W +LK++M Q G V + + + ++E++T + R
Sbjct: 62 TQQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEART 121
Query: 494 AIEKL 508
AI+ L
Sbjct: 122 AIKTL 126
Score = 36.7 bits (81), Expect = 0.002
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Frame = +2
Query: 14 VYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADDAVYELN 172
+YVG LP+ +R+L F G + I G+G V+FE+ DA ++ +LN
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 173 G 175
G
Sbjct: 342 G 342
Score = 27.1 bits (57), Expect = 1.8
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +2
Query: 344 LIVENLSSRISWQDLKDYMRQAGEVTYA----DAHKQHRNEGVVEFATHSDMRAAIEKLD 511
+ V NL S ++L D G V A + + + GVV+F +D ++IEKL+
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 512 G 514
G
Sbjct: 342 G 342
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 44.8 bits (101), Expect = 8e-06
Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 7/64 (10%)
Frame = +2
Query: 14 VYVGGLPFGVRERDLEKFFKGFGR-IR-DILI-----KNGYGFVEFEDYRDADDAVYELN 172
+YV G G+R R+L F+ FG IR DI I + FVE+ED RDA+DA YE++
Sbjct: 9 LYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAEDAYYEVH 68
Query: 173 GKEL 184
G+ L
Sbjct: 69 GRRL 72
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 42.7 bits (96), Expect = 3e-05
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Frame = +2
Query: 11 RVYVGGLPFGVRERDLEKFFKGFGRIRDI------------LIKNGYGFVEFEDYRDADD 154
RV+VG L ++ ++ F+ G +R + L+ +G FV F + D D
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104
Query: 155 AVYELNGKELLGERVVVEPARGI 223
A+ LNGK L +VV+ AR +
Sbjct: 105 AIETLNGKTLDDREIVVQKARPV 127
Score = 31.5 bits (68), Expect = 0.085
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +2
Query: 110 GYGFVEFEDYRDADDAVYELNGKELLGERVVVEPA 214
G+GFV F + D A+ E+NGK++ +VV+ A
Sbjct: 259 GFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSA 293
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 42.3 bits (95), Expect = 5e-05
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Frame = +2
Query: 14 VYVGGLPFGVRERDLEKFFKGFGRIRDILIK--NGYGFVEFEDYRDADDAVYELNG 175
V+VGGL + E+DL+ F+ FGRI +I I G GFV++ + A+ A+ + G
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQG 354
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 41.1 bits (92), Expect = 1e-04
Identities = 42/185 (22%), Positives = 74/185 (40%), Gaps = 11/185 (5%)
Frame = +2
Query: 2 HEAR-VYVGGLPFGVRERDLEKFFKGFGRIRDILI------KNGYGFVEFEDYRDADDAV 160
+E R +YV + F V E+D+E FF+ +G++ + I G+G+V +DA++A+
Sbjct: 754 YEGRELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQDAENAL 813
Query: 161 YELNGKELLGER----VVVEPARGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPPT 328
GK+ LG R V+ +P +
Sbjct: 814 -SAAGKQ-LGNRVLNVVLSKPRESLEKTRVSSNDNRTLAKSFETTESNKMSTPKKSFEQI 871
Query: 329 RTEYRLIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKL 508
+++ L V N+ ++ L+ G++ H +H VVEF D A L
Sbjct: 872 KSK-SLGVTNVDGTVNEARLRSLFESYGKLYRVVLHPEHEG-AVVEFLDIHDAGKASLAL 929
Query: 509 DGTEL 523
+G E+
Sbjct: 930 EGHEI 934
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 41.1 bits (92), Expect = 1e-04
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Frame = +2
Query: 14 VYVGGLPFGVRERDLEKFFKGFGRIRDILIK--NGYGFVEFEDYRDADDAVYELNGKELL 187
V+VGGL V E +L+ F+ FG I + I G GFV+F + + A+ A+ +L G L
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLG 364
Query: 188 GERV 199
R+
Sbjct: 365 NSRI 368
Score = 32.7 bits (71), Expect = 0.037
Identities = 34/144 (23%), Positives = 50/144 (34%), Gaps = 3/144 (2%)
Frame = +2
Query: 101 IKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEPAR-GIXXXXXXXXXXXXXXXXXX 277
+ GYGFV F D D A+ E+ G ++ G+R P R G+
Sbjct: 226 VSRGYGFVRFTDENDQKSALAEMQG-QICGDR----PIRVGLATPKSKAHVFSPVNVVPV 280
Query: 278 XXXXXXXXXXXXXGP--PTRTEYRLIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRN 451
P + V LS +S ++LK + GE+ Y +
Sbjct: 281 SMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKI-PPGKG 339
Query: 452 EGVVEFATHSDMRAAIEKLDGTEL 523
G V+F AI +L G L
Sbjct: 340 CGFVQFVNRQSAEIAINQLQGYPL 363
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 40.3 bits (90), Expect = 2e-04
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
Frame = +2
Query: 14 VYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN------GYGFVEFEDYRDADDAVYELN 172
VY+ L + E++ F FG I + L+K+ G+GFV + ++ A AV ELN
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322
Query: 173 GKELLGERVVVEPAR 217
KE G+++ V A+
Sbjct: 323 DKEYKGKKLYVGRAQ 337
Score = 32.3 bits (70), Expect = 0.048
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Frame = +2
Query: 14 VYVGGLPFGVRERDLEKFFKGFGRIRDILIK-------NGYGFVEFEDYRDADDAVYELN 172
V++ L + + L F FG+I + GYGFV F+ A+ A+ +N
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVN 229
Query: 173 GKELLGERVVV 205
G L ++V V
Sbjct: 230 GMLLNDKKVYV 240
Score = 30.3 bits (65), Expect = 0.20
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Frame = +2
Query: 8 ARVYVGGLPFGVRERDLEKFFKGFGRI------RDILIKN--GYGFVEFEDYRDADDAVY 163
A +YVG L V E L + F G + RD + + GY +V F + D + A+
Sbjct: 80 ASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALD 139
Query: 164 ELN 172
ELN
Sbjct: 140 ELN 142
Score = 27.9 bits (59), Expect = 1.0
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Frame = +2
Query: 14 VYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADDAVYELN 172
+++ L V + L+ F FG I I G+GFV + +A+ AV E+N
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMN 425
Query: 173 GKELLGERVVVEPAR 217
+ L G+ + V A+
Sbjct: 426 QRMLAGKPLYVALAQ 440
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 38.7 bits (86), Expect = 6e-04
Identities = 22/68 (32%), Positives = 33/68 (48%)
Frame = +2
Query: 14 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGE 193
VYV LP + ++L +F FG I + N G + F A+ A+ E+N L G
Sbjct: 178 VYVHQLPENITTQELRSYFLHFGEILYTQVNNNSGRIVFAQRYFAEQAINEMNNFPLHGV 237
Query: 194 RVVVEPAR 217
R+ + AR
Sbjct: 238 RIQLSWAR 245
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 38.3 bits (85), Expect = 7e-04
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Frame = +2
Query: 14 VYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVYEL 169
+++ L + +E D+E+ F +G I I +++N GY FV FE RD A
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKAS 161
Query: 170 NGKELLGERVVVEPARG 220
G L G R+VV+ RG
Sbjct: 162 AGLMLNGRRIVVDVERG 178
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 38.3 bits (85), Expect = 7e-04
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +2
Query: 14 VYVGGLPFGVRERDLEKFFKGFGRIR--DILIKNGYGFVEFEDYRDADDAVYELN 172
V++G LP E+++E+ F FG+I IL K FV F + RDA V L+
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHFLNIRDAIKVVRTLS 355
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 37.9 bits (84), Expect = 0.001
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Frame = +2
Query: 14 VYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYEL 169
V+VG +P+ V E+ + + F G ++ + GYGF EF D AV +L
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 170 NGKELLGERVVVE 208
N EL ++ VE
Sbjct: 69 NNSELGPRKIRVE 81
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 37.5 bits (83), Expect = 0.001
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Frame = +2
Query: 14 VYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYEL 169
++V L F ++ DL FF G I+ ++ GYGFV F DA A EL
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 170 NGKELLG 190
K+L G
Sbjct: 67 KNKKLHG 73
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/31 (32%), Positives = 22/31 (70%)
Frame = +2
Query: 110 GYGFVEFEDYRDADDAVYELNGKELLGERVV 202
G+GF++F ++ A A+ LNG+E+ ++++
Sbjct: 540 GFGFMQFISHKYALMALRWLNGREITVKKII 570
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 37.5 bits (83), Expect = 0.001
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Frame = +2
Query: 11 RVYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVYE 166
++Y+ LP + E + + K FG + LIKN G+ F EF++ DA+ A+
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISG 370
Query: 167 LNGKELLGERV 199
L+GK+ G ++
Sbjct: 371 LDGKDTYGNKL 381
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 37.5 bits (83), Expect = 0.001
Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +2
Query: 8 ARVYVGGLPF-GVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKEL 184
+R+++G L + +R+L K FK +G + I++K YGFV+F D A+ G +
Sbjct: 363 SRLFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKANYGFVQFFTNEDCARALNAEQGNFV 422
Query: 185 LGERVVVE 208
G+++ +E
Sbjct: 423 RGQKLHLE 430
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 35.9 bits (79), Expect = 0.004
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 13/81 (16%)
Frame = +2
Query: 5 EARVYVGGLPFGVRERDLEKFFKGFGRIRDILI----KNG---------YGFVEFEDYRD 145
E +YVG LP + DL + F+ FG + KN + F+ FE+
Sbjct: 19 EISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCS 78
Query: 146 ADDAVYELNGKELLGERVVVE 208
AD+A+ LNG G + VE
Sbjct: 79 ADNAIASLNGSSFQGNTLKVE 99
Score = 30.7 bits (66), Expect = 0.15
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Frame = +2
Query: 50 RDLEKFFKGFGRIRDIL--------IKNGYGFVEFEDYRDADDAVYELNG 175
+ LE+ F FGRI+ I GYGFV F +A A+ LNG
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNG 484
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 35.5 bits (78), Expect = 0.005
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Frame = +2
Query: 11 RVYVGGLPFGVRERDLEKFFKGFGRIRDILIK--------NGYGFVEFEDYRDADDAVYE 166
R+++ L + E DL+ F FG++ + + G+ +++F D DA A E
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383
Query: 167 LNGKELLGERVVVEPAR 217
L+ K G + V PA+
Sbjct: 384 LDAKPFQGRLLHVLPAK 400
Score = 33.5 bits (73), Expect = 0.021
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 13/80 (16%)
Frame = +2
Query: 8 ARVYVGGLPFGVRERDLEKFFKGF-GRIRDIL------------IKNGYGFVEFEDYRDA 148
A +YV L F ++ + +K FK G + ++ + G+GFVEF+D A
Sbjct: 619 ATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASA 678
Query: 149 DDAVYELNGKELLGERVVVE 208
A++ +NG L G ++ ++
Sbjct: 679 VAAMHAMNGFVLDGHKLEIK 698
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 35.1 bits (77), Expect = 0.007
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Frame = +2
Query: 5 EARVYVGGLPFGVRERDLEKFFKGFGRI-------RDILIKNGYGFVEFEDYRDADDAVY 163
+A V+VG L V E L F FG I ++ + Y FVEF++ DA +A+
Sbjct: 5 KATVHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAME 64
Query: 164 ELNGKELLGERVVVEPA 214
+N L + V PA
Sbjct: 65 NMNYSILCDRCIRVSPA 81
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 34.7 bits (76), Expect = 0.009
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Frame = +2
Query: 8 ARVYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVY 163
A +Y+G L F + E D+ F FG DI L+++ G+ F+++ED R AV
Sbjct: 31 AYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVD 90
Query: 164 ELNGKELLGERVVVE 208
+ +LL V V+
Sbjct: 91 NMTNVKLLDRLVRVD 105
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 34.7 bits (76), Expect = 0.009
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Frame = +2
Query: 14 VYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYEL 169
VYVG +P+ + E + FK G ++ + GYGF E+ D A AV L
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 170 NGKELLGERVVVE 208
N + R+ V+
Sbjct: 67 NNYDAGTRRLRVD 79
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 34.7 bits (76), Expect = 0.009
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Frame = +2
Query: 8 ARVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFED 136
A+++VGG+P E + FF FGR+ D + G+GFV +E+
Sbjct: 247 AKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYEN 297
Score = 31.1 bits (67), Expect = 0.11
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Frame = +2
Query: 5 EARVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAV 160
+ ++++GGL + + L +F+ FG + D + G+GF+ F++ + V
Sbjct: 162 DGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPK----CV 217
Query: 161 YELNGKELLGERVVVEPARGI 223
E+ KE + +++P R I
Sbjct: 218 NEVMSKEHHLDGKIIDPKRAI 238
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 33.9 bits (74), Expect = 0.016
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 5 EARVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN 109
E R+YVGGL + DLE F FG + ++ I N
Sbjct: 4 EKRIYVGGLSSSIESSDLESRFSRFGSVSNLEIIN 38
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 33.5 bits (73), Expect = 0.021
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Frame = +2
Query: 14 VYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYEL 169
V+V L + R+L FF+ G +RD I G +VEF + D+ A L
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEF-CHEDSVQAAIAL 300
Query: 170 NGKELLGERVVVE 208
+GK LLG V+V+
Sbjct: 301 SGKRLLGLPVIVQ 313
Score = 32.7 bits (71), Expect = 0.037
Identities = 17/72 (23%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Frame = +2
Query: 11 RVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN-------GYGFVEFEDYRDADDAVYEL 169
R+ V + F + + D++ F+ FG I + ++ G+G++++ + A +A+ ++
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKM 400
Query: 170 NGKELLGERVVV 205
NG +L G + V
Sbjct: 401 NGFDLAGRNMRV 412
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 33.5 bits (73), Expect = 0.021
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Frame = +2
Query: 8 ARVYVGGLPFGVRERDLEKFFKGFGRI-------RDILIKN-GYGFVEFEDYRDADDAVY 163
A ++VG L V ER L F G++ RD ++ GYGFV ++ + AD A+
Sbjct: 99 ANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIE 158
Query: 164 ELNGKELLGERVVVEPA 214
+N + L+ + + V A
Sbjct: 159 AMNNQFLMNKPITVSYA 175
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 31.5 bits (68), Expect = 0.085
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +2
Query: 68 FKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEPAR 217
F GF +R + + G FVE++ R+A A G L G ++ V AR
Sbjct: 197 FSGFQEVRMVPGRRGIAFVEYDSDREATVAKNGTTGMSLSGNQIKVTFAR 246
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 29.9 bits (64), Expect = 0.26
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Frame = +2
Query: 14 VYVGGLPFGVRERDLEKFFKGFGRIRDILI----KNG----YGFVEFEDYRDADDAVYEL 169
+YVG LP G E+ + +F FG + + + K G Y F+EFE D + V E
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESL-DVANVVAET 165
Query: 170 NGKELL 187
LL
Sbjct: 166 MHNYLL 171
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 29.5 bits (63), Expect = 0.34
Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = +2
Query: 14 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGY--GFVE 127
+++GG+ VRE L F+ FG ++ +++ + Y GF++
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLK 447
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.9 bits (59), Expect = 1.0
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Frame = +2
Query: 14 VYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYEL 169
V+VG L + V ++ L + F+ +G I + GYG+V+FE A AV
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324
Query: 170 NGKELLGERV 199
KE+ G V
Sbjct: 325 GTKEIDGRMV 334
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 27.9 bits (59), Expect = 1.0
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Frame = +2
Query: 14 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKN------GYGFVEFEDYRDADDAVYELN 172
+Y+ LP E D+ FK I + ++++ G GF +D + A+D + + N
Sbjct: 386 LYISNLPLHWNESDISTLFKPSKIISNRVLRDSKEQSRGVGFARMQDRKTAEDIINKFN 444
Score = 24.6 bits (51), Expect = 9.7
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
Frame = +2
Query: 14 VYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDA 148
VY+ GLP + +L + FG++ + + GYGF FE+ + A
Sbjct: 298 VYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKSA 350
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 27.1 bits (57), Expect = 1.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 110 GYGFVEFEDYRDADDAVYELNGKELLGERVVV 205
G F +FE+ AD V EL+GK++L V
Sbjct: 92 GLVFADFENVDGADLCVQELDGKQILKNHTFV 123
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = +2
Query: 14 VYVGGLPFGVRERDLEKFFKGFGRIRDI--LIKNGYGFVEFEDYRDA 148
+YV LP G + F +G ++DI L + V +E A
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWMLSPDNSAIVSYESLSSA 48
>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 530
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 329 ASVVRIYNCSHRIVIGLDRDRALSSDL 249
+S V + +RI+ G++RD AL SD+
Sbjct: 438 SSEVNFCSIDNRIIAGMNRDLALDSDI 464
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 101 IKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEPAR 217
++ Y FV+F++ DA A+ E L G + +E A+
Sbjct: 119 LQRPYSFVQFQNTDDASKALSEAQNTILDGRHIRIERAK 157
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 542 SNLPSVQAPSRPTSR*PLACPNESRTRPR 456
SN+P+ P+RPT P + S T PR
Sbjct: 404 SNVPAYSTPARPTESPPPPPISSSSTTPR 432
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 25.8 bits (54), Expect = 4.2
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Frame = +2
Query: 11 RVYVGGLPFGVRERDLEKFFKGFGR------IRDILIKN-GYGFVEFEDYRDADDAVYEL 169
R++VG L V + L + F + +RD K G+GFV F+D A E
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREK 90
Query: 170 NGKELLGERVV 202
NGK +G R V
Sbjct: 91 NGK-YIGSRPV 100
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 101 IKNGYGFVEFEDYRDADDAVYELNGKELLGERVVV 205
I GYGFV F A A LNG + +R+ V
Sbjct: 423 ISKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRIFV 457
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -3
Query: 520 LRPVQLLDSRSHVRMSRELDHAFIPMLFVSISIGHFTSLTHVIFQV 383
LRP L+ + + + E+D IP L + IG T ++ Q+
Sbjct: 964 LRPYNGLEVKLNANNNLEIDTGNIPSLTLRRQIGFLTMTEELLLQI 1009
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 90 LILPKPLKNFSRSLSLTPKGRPPT*TRAS 4
+ LPKP K + L +P R TRAS
Sbjct: 419 MALPKPSKEMKKKLKKSPPKRKRITTRAS 447
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -3
Query: 88 NSSKTFEELLKVPLPHTKRET 26
N++ +FE L +PLP +K++T
Sbjct: 53 NNTDSFERGLSLPLPSSKQDT 73
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 24.6 bits (51), Expect = 9.7
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 515 SRPTSR*PLACPNESRTRPRLHSYAVCEHQHRSLHQLDACNLS 387
++PTS P S + P + S + + QHR + +L+A N S
Sbjct: 313 AQPTSHVPSFIDTNSPSMPSISSVSSYQQQHR-IPKLNASNYS 354
>SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase
YakC|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 35 FGVRERDLEKFFKGFGRIRDILIKNGYGF 121
FG E + ++FK GR ++I + +G+
Sbjct: 58 FGANEECIGRWFKQTGRRKEIFLATKFGY 86
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,946,505
Number of Sequences: 5004
Number of extensions: 34363
Number of successful extensions: 169
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -