Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_K17
         (549 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    25   0.51 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    24   0.88 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   0.88 
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              23   2.7  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    23   2.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.7  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          21   6.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.2  

>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 25.0 bits (52), Expect = 0.51
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = +3

Query: 126 SLKITEMLMMLCMS-*MGKNCLEKGW----SWSRPGESTGAQTGTGEIATQSAIAIE 281
           +L I++ LMM CMS  M  NC  + W     + +     G+  G G I T + IA +
Sbjct: 59  NLAISDFLMMFCMSPPMVINCYYETWVLGPLFCQIYAMLGSLFGCGSIWTMTMIAFD 115


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
 Frame = +3

Query: 126 SLKITEMLMMLCMS-*MGKNCLEKGW----SWSRPGESTGAQTGTGEIATQSAIAIE 281
           +L I+  LMM CMS  M  NC  + W     + +     G+  G G I T + IA +
Sbjct: 93  NLAISNFLMMFCMSPPMVINCYYETWVLGPLFCQIYAMLGSLFGCGSIWTMTMIAFD 149


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = +2

Query: 335  EYRLIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATH 478
            E+ L + NL +   +  +     + G    ++  +QH  EGV E   H
Sbjct: 1039 EHHLQIMNLKTYTQYSVVVQAFNKVGSGPMSEERRQHTAEGVPEQPPH 1086



 Score = 21.4 bits (43), Expect = 6.2
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 204 WSRPGESTGAQTG 242
           WS PGE  G  +G
Sbjct: 618 WSYPGEEMGGSSG 630


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 187 KQFFPIQLIHSIISISVIF 131
           K+ F I  IHSI  I +IF
Sbjct: 2   KENFSIMFIHSIFLILIIF 20


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 187 KQFFPIQLIHSIISISVIF 131
           K+ F I  IHSI  I +IF
Sbjct: 2   KENFSIMFIHSIFLILIIF 20


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 59  QGPSPSHQKGDHRRRP 12
           +G SP HQ G+H   P
Sbjct: 330 RGSSPHHQHGNHTMGP 345


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 180 NCLEKGWSWSRPGESTGAQTGTG 248
           N +++  SWSRP ES    +  G
Sbjct: 39  NNIKRKRSWSRPRESAQTTSKAG 61


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 184 AWRKGGRGAGPGNR 225
           +W K GR  GP  R
Sbjct: 644 SWLKDGRAMGPSER 657


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,197
Number of Sequences: 438
Number of extensions: 2355
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)