Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_K16
(525 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi... 36 0.005
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 33 0.020
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.080
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 31 0.11
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ... 30 0.24
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 27 2.3
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.0
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo... 25 5.2
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 25 6.9
>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 35.5 bits (78), Expect = 0.005
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +2
Query: 8 DKDKSGYIAVKEF--KLFFECLGLHNDHAAVAFAAIDINGDGKLSLDEFVKL 157
D DK+GYI KEF L G ND AF D++ +G +S DE +++
Sbjct: 73 DADKNGYIDFKEFICALSVTSRGELNDKLIWAFQLYDLDNNGLISYDEMLRI 124
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 33.5 bits (73), Expect = 0.020
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +2
Query: 8 DKDKSGYIAVKEFKLFFECLG--LHNDHAAVAFAAIDINGDGKLSLDEFVKL 157
DKD +GYI V+E LG L + A D +GDG ++ +EF ++
Sbjct: 95 DKDGNGYITVEELTHVLTSLGERLSQEEVADMIREADTDGDGVINYEEFSRV 146
Score = 24.6 bits (51), Expect = 9.1
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +2
Query: 8 DKDKSGYIAVKEFKLFFECLGLHNDHAAVAFAAIDINGDGKLSLD--EFV-KLGRDFFIT 178
D+D+ G I E + LG A + +++ DG ++D EF+ + R T
Sbjct: 22 DRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTIDFTEFLTMMARKMKDT 81
Query: 179 EDETRVSKMF 208
++E V + F
Sbjct: 82 DNEEEVREAF 91
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 31.5 bits (68), Expect = 0.080
Identities = 20/50 (40%), Positives = 30/50 (60%)
Frame = -1
Query: 228 TSMSGPQNIFETLVSSSVMKKSLPSFTNSSNDSLPSPLMSMAAKATAAWS 79
+S S + TL SSS+ S+PS T+SS+ S S L S ++ +TA+ S
Sbjct: 218 SSSSPSSSSSSTLTSSSLSTSSIPS-TSSSSSSTSSSLSSSSSSSTASSS 266
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 31.1 bits (67), Expect = 0.11
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +2
Query: 8 DKDKSGYIAVKEFKLFFECLGLHNDHAAVAFAAIDINGDGKLSLDEF 148
DK GY++ E FF L D A + D N +GKL++ EF
Sbjct: 271 DKAHKGYVSGSEAYSFFLASKLPEDVLAQIWDLSDTNSNGKLNIGEF 317
>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 409
Score = 29.9 bits (64), Expect = 0.24
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2
Query: 80 DHAAVAFAAIDINGDGKLSLDEFVKLGRDFFITE 181
D A FA+ D+N D +L+EFVK +DFF+ +
Sbjct: 219 DIAYQGFASGDLNRDS-WALNEFVKYNKDFFVCQ 251
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 26.6 bits (56), Expect = 2.3
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +2
Query: 8 DKDKSGYIAVKEFKLFFECLG--LHNDHAAVAFAAIDINGDGKLSLDEFVK 154
DKD SGYI +F + + LG L ++ + D G +FV+
Sbjct: 88 DKDNSGYIETAKFADYMKTLGEKLSDNEVQLMVQEADPTNSGSFDYYDFVQ 138
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.8 bits (54), Expect = 4.0
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = -1
Query: 186 SSSVMKKSLPSFTNSSNDSLPSPLMSMAAKATAAWSLCKPKHSKNNLNSFTAMYPDLSLS 7
SSS S SFT+ ++ S + L+S +++ +++ S S L S ++ P S S
Sbjct: 60 SSSSSPLSSSSFTSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSASPTSSSS 119
Query: 6 S 4
S
Sbjct: 120 S 120
>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 144 SSNDSLPSPLMSMAAKATAAWSLCKPK 64
S + S SPL +M K +S+C PK
Sbjct: 56 SPHGSYISPLEAMTVKLADTYSICNPK 82
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 25.0 bits (52), Expect = 6.9
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 190 RLVLRDEEISPELHELV 140
RL+ R EEI PE+H L+
Sbjct: 1170 RLIARVEEIRPEVHRLL 1186
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,756,865
Number of Sequences: 5004
Number of extensions: 31890
Number of successful extensions: 115
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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