Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_K15
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...   120   2e-28
SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   3.4  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    26   4.5  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    26   4.5  
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    25   7.8  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score =  120 bits (288), Expect = 2e-28
 Identities = 66/167 (39%), Positives = 94/167 (56%), Gaps = 1/167 (0%)
 Frame = +3

Query: 72  MIIYKDVITGDEMFSDTYKVKLIDEVIYEVPADVIRTQDDIHID-GLTXXXXXXXXXXXX 248
           M++YKDVI+GDE+ SD Y +K +D+++YE    ++  +    +D G              
Sbjct: 1   MLLYKDVISGDELVSDAYDLKEVDDIVYEADCQMVTVKQGGDVDIGANPSAEDAEENAEE 60

Query: 249 XXXWCRHSPESHVLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVDIFKTNMNKVM 428
                 +   S  L  T +F DKKSY  Y+K YMK + A+L+E  P++V +F+ N    +
Sbjct: 61  GTETVNNLVYSFRLSPT-SF-DKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGFV 118

Query: 429 KDILARFKDLQFFTGESMDCDGMVAMMEYRNINGTDVPFMMFFKHGL 569
           K ILA FKD  F+ GESMD D MV +M YR    T  P+M+FFK GL
Sbjct: 119 KKILANFKDYDFYIGESMDPDAMVVLMNYREDGIT--PYMIFFKDGL 163


>SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 140

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 45  ILNRLQSIKMIIYKDVITGDEMFSDTYKVKLID 143
           ILN++    M IY   IT D   SDTY++   D
Sbjct: 30  ILNKIFHPCMYIYSRGITNDTYSSDTYELDWYD 62


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -3

Query: 397 STWSGAFSSNFATNFFM*SLRYNV*DFLSPNAYVSTSTCDSG 272
           S W GAF+ NF   F    L Y   +F +  A      C++G
Sbjct: 759 SEWLGAFAQNFYRRFLS-LLGYQFREFAAITALSVLDACNNG 799


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 559 LKNIMNGTSVPLIFLYSIMATMPSQSMD 476
           L+ ++NG S+P I ++ I   MPS++ +
Sbjct: 40  LRVVINGDSLPSILMHVIRFVMPSRNKE 67


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 288 LVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVDIFKT 410
           L+E   F ++K  T+YLK   + L  K +   PD V+   T
Sbjct: 97  LIEKVGFHNRK--TIYLKQMARILSEKFQGDIPDTVEDLMT 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,447,233
Number of Sequences: 5004
Number of extensions: 50103
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)