Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_K15
         (570 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436...    79   2e-15
01_06_0241 - 27813076-27813622,27813695-27814125                       29   2.6  
05_07_0014 - 27046329-27046371,27059170-27060017,27060739-27061563     29   3.4  
04_04_0016 - 22167780-22167873,22167978-22168272,22168380-221684...    28   4.6  
03_02_1023 + 13265179-13265330,13265526-13265637,13265752-132660...    27   8.0  

>11_06_0628 -
           25643006-25643123,25643314-25643471,25643559-25643687,
           25644378-25644451,25644771-25644798
          Length = 168

 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 52/169 (30%), Positives = 87/169 (51%), Gaps = 3/169 (1%)
 Frame = +3

Query: 72  MIIYKDVITGDEMFSDTYKVKLIDE-VIYEVPAD-VIRTQDDIHIDGL-TXXXXXXXXXX 242
           M++Y+D++TGDE+ SD++  + I+  +++EV    V++   D+ I    +          
Sbjct: 1   MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQGAIDVDIGANPSAEGGGDDEGV 60

Query: 243 XXXXXWCRHSPESHVLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVDIFKTNMNK 422
                      ++  L E   F DKK +  ++K Y+K L AKL+ +  ++   FK N+  
Sbjct: 61  DDQAVKVVDIVDTFRLQEQPPF-DKKQFVTFMKRYIKNLSAKLDAEKQEE---FKKNIEG 116

Query: 423 VMKDILARFKDLQFFTGESMDCDGMVAMMEYRNINGTDVPFMMFFKHGL 569
             K +L + KDLQFF GESM  DG +    Y+  +G   P  ++F HGL
Sbjct: 117 ATKYLLGKLKDLQFFVGESMHDDGGLVFAYYK--DGATDPTFLYFSHGL 163


>01_06_0241 - 27813076-27813622,27813695-27814125
          Length = 325

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +3

Query: 267 HSPESHVLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVDIFKTNMNKVMKDI 437
           H PES + ++   F   K     + +Y+ +   KL   AP++VD  K  + K +K I
Sbjct: 198 HVPESTIDMKKEEFNRLKQGNNSVNEYLSQF-NKLARYAPEEVDTDKKKIRKFLKGI 253


>05_07_0014 - 27046329-27046371,27059170-27060017,27060739-27061563
          Length = 571

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +3

Query: 267 HSPESHVLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVDIFKTNMNKVMKDI 437
           H PES + ++   F   K     + +Y+ +   KL   AP++VD  K  + K +K I
Sbjct: 391 HVPESTIDMKKEEFNRLKQGHSSVNEYLSQF-NKLARYAPEEVDTDKKKIRKFLKGI 446


>04_04_0016 -
           22167780-22167873,22167978-22168272,22168380-22168455,
           22168665-22168853,22168955-22169176,22169315-22169413,
           22169502-22169582,22169753-22170060,22171611-22171950,
           22172047-22172110,22172191-22172412,22172865-22173043
          Length = 722

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -1

Query: 393 PGQVLFLPILLLIFSCSL*GIMYRISYRQMHTFRLAH 283
           P Q+L L  + L+F   +  + + ++YR  HT+R+ H
Sbjct: 91  PDQLLDLECVQLVFLADV-AVHFFLAYRDPHTYRMVH 126


>03_02_1023 + 13265179-13265330,13265526-13265637,13265752-13266048,
            13266361-13266623,13267637-13267847,13268420-13268590,
            13268671-13268748,13269275-13269520,13269763-13271868,
            13272122-13273904,13274113-13274216,13274752-13275108,
            13275210-13275328,13276175-13276436,13276669-13276893,
            13277075-13277214,13278087-13278159,13278431-13278532,
            13278647-13279018,13279183-13279230,13279516-13279900,
            13280440-13280558
          Length = 2574

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -3

Query: 406  LNISTWSGAFSSNFATNFFM*SLRYNV*DFLSPNAYVSTSTCDSG 272
            L +S  SGA SS F + F M + R +V    + +  VS S  D G
Sbjct: 1103 LKVSEGSGACSSGFQSGFKMSTRRSSVMSVCAKDVDVSLSKIDGG 1147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,300,539
Number of Sequences: 37544
Number of extensions: 301338
Number of successful extensions: 754
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)