Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_K14
(364 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 26 2.1
SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyc... 25 2.7
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch... 25 4.8
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc... 24 6.3
SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha... 24 6.3
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz... 24 6.3
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom... 24 6.3
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 24 8.3
SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr... 24 8.3
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 24 8.3
>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 25.8 bits (54), Expect = 2.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 315 FYKKQKEQLHELKTHLDKEINFHSEQI 235
FY+K E+ E K+H +E+ F E I
Sbjct: 188 FYEKSDEEEDEEKSHSAEELEFGEEDI 214
>SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 164
Score = 25.4 bits (53), Expect = 2.7
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = -2
Query: 339 ACTEKKNTFYKKQKEQLHELKTHLDKEINFHSEQIKRHEDAINRHKTKLAEIEKK*T 169
AC E+ Y Q + + L+T ++K N H I+ E+ + K +L ++EK+ T
Sbjct: 77 ACIEELLDIYPMQGGREY-LETLVEK-YNLHMSGIENLENVLLEQKEQLQQLEKRQT 131
>SPCC126.14 |prp18||U5 snRNP-associated protein
Prp18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 343
Score = 24.6 bits (51), Expect = 4.8
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Frame = -2
Query: 330 EKKNTFYKKQKEQLHELKTH-LDKEINFHSEQIKRHEDAINRHKTKLAEIEKK*T---*H 163
EKK K+QK++ ELK L++E + E+ R N+ ++ E+ + T
Sbjct: 37 EKKYLQEKQQKDEQRELKKRKLEEERLKYEEKKLRISRLANKESSRNEELLTETTTPSPA 96
Query: 162 IHSSPSNYKVSVN 124
+ +SP++ K+SV+
Sbjct: 97 VKASPASTKLSVS 109
>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
Mus81|Schizosaccharomyces pombe|chr 3|||Manual
Length = 608
Score = 24.2 bits (50), Expect = 6.3
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +3
Query: 318 YSSSLCKPPNF 350
+ SSLC+PPNF
Sbjct: 230 HDSSLCQPPNF 240
>SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 475
Score = 24.2 bits (50), Expect = 6.3
Identities = 6/21 (28%), Positives = 14/21 (66%)
Frame = +3
Query: 141 NLMDSNVCVMFTSSQFQPVWS 203
+++D + F +S F+P+W+
Sbjct: 181 DMIDGFTAIRFANSMFEPIWN 201
>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1473
Score = 24.2 bits (50), Expect = 6.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -2
Query: 297 EQLHELKTHLDKEINFHSEQIKRHEDAINRHKTK 196
E++ E+ + +E H + IK H+D HKT+
Sbjct: 1207 EKVEEVLGYKFEEARDHPQFIKNHDDFEGWHKTE 1240
>SPAC1834.07 |klp3|krp1|kinesin-like protein
Klp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 24.2 bits (50), Expect = 6.3
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -2
Query: 144 NYKVSVNLVINNKLND 97
N++V+ NL NN LND
Sbjct: 473 NHRVNSNLTANNSLND 488
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 23.8 bits (49), Expect = 8.3
Identities = 10/41 (24%), Positives = 24/41 (58%)
Frame = -2
Query: 309 KKQKEQLHELKTHLDKEINFHSEQIKRHEDAINRHKTKLAE 187
K+++E++ + K + + + E +KRH ++ KTK ++
Sbjct: 642 KEEEERIAQQKREEKRRLAYE-ESLKRHAKKLHEKKTKSSQ 681
>SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 112
Score = 23.8 bits (49), Expect = 8.3
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -2
Query: 300 KEQLHELKTHLDKEINFHSEQIKRHEDAINRHKTKLAEIEK 178
K L ++THLD E+ E I+ + H+T + E+
Sbjct: 62 KSDLASVRTHLDAEMASLREDIEALQKKQTYHETTASNAEQ 102
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 23.8 bits (49), Expect = 8.3
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 330 EKKNTFYKKQKEQLHELKTHLDKEINFHSEQI 235
E+ + +++ L ELK HLD I F +++
Sbjct: 728 ERLSKLLEEENSDLGELKNHLDSIIAFGPKRV 759
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,414,662
Number of Sequences: 5004
Number of extensions: 24491
Number of successful extensions: 93
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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