Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_K13
(566 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 350 7e-98
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 192 2e-50
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 190 9e-50
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 109 2e-25
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 107 8e-25
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 84 2e-17
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 49 6e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 54 1e-08
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 33 0.039
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 27 1.5
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 27 1.9
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 27 2.5
SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 3.4
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch... 25 7.7
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 25 7.7
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 350 bits (861), Expect = 7e-98
Identities = 165/187 (88%), Positives = 175/187 (93%)
Frame = +1
Query: 4 RGTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAER 183
R TGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKIL ERGY+F+TTAER
Sbjct: 147 RTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAER 206
Query: 184 EIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSF 363
EIVRDIKEKLCYVALDFEQE+ TAA SSSLEKSYELPDGQVITIGNERFR PEALFQPS
Sbjct: 207 EIVRDIKEKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSA 266
Query: 364 LGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMK 543
LG+E GIHE TYNSIMKCDVDIRKDLY N V+SGGTTMYPGIADRMQKEI ALAPS+MK
Sbjct: 267 LGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMK 326
Query: 544 IKIIAPP 564
+KI+APP
Sbjct: 327 VKIVAPP 333
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 192 bits (469), Expect = 2e-50
Identities = 87/172 (50%), Positives = 122/172 (70%)
Frame = +1
Query: 10 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREI 189
+G+V+DSGDGV+H VP+YE L H + RLD+AGRD T YL+ +L +GY+F TA+ E
Sbjct: 149 SGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYAFNRTADFET 208
Query: 190 VRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLG 369
VR++KEKLCYV+ D E + + ++ L ++Y LPDG+VI +G+ER+ CPE LFQP +G
Sbjct: 209 VREMKEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPECLFQPHLVG 268
Query: 370 MEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL 525
E G+ E +++I DVDIRK LY VLSGG++MY G+ R++KEI L
Sbjct: 269 SEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQL 320
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 190 bits (464), Expect = 9e-50
Identities = 87/188 (46%), Positives = 125/188 (66%)
Frame = +1
Query: 1 ARGTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAE 180
AR TGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+TDYL L + G+ ++AE
Sbjct: 151 ARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHELVSSAE 210
Query: 181 REIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPS 360
+EIVR+IKEK CYVA DF E+ + +Y+LPD Q IT+G E F PE LF P
Sbjct: 211 KEIVREIKEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNPE 270
Query: 361 FLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTM 540
+G EA G+H + SI+ D+D+R LY+N VLSGG+T+ G +R E+ A++
Sbjct: 271 MMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKKN 330
Query: 541 KIKIIAPP 564
++KI A P
Sbjct: 331 QVKIYASP 338
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 109 bits (263), Expect = 2e-25
Identities = 65/202 (32%), Positives = 103/202 (50%), Gaps = 20/202 (9%)
Frame = +1
Query: 16 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR 195
+V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+ E IV
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNMME--ETYIVN 216
Query: 196 DIKEKLCYVALDFEQEMATAASS--SSLEKSYELPD------------------GQVITI 315
+IKE +CYV+ +F+++M S LE Y LPD QV+ +
Sbjct: 217 EIKESVCYVSQNFKEDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIEQQVLNL 276
Query: 316 GNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIA 495
NERF PE LF PS + + GI E S+ +I+ L N V GG +PG
Sbjct: 277 SNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFH 336
Query: 496 DRMQKEITALAPSTMKIKIIAP 561
R+ E+ +LAP+ ++K+ P
Sbjct: 337 KRLSSELRSLAPANWEVKVFEP 358
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 107 bits (258), Expect = 8e-25
Identities = 64/176 (36%), Positives = 95/176 (53%), Gaps = 7/176 (3%)
Frame = +1
Query: 10 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY--SFTTTAER 183
TG V+DSGDGV+H +P+ EGY + +I + LAGRD+T ++ +L +R S TAER
Sbjct: 180 TGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER 239
Query: 184 EIVRDIKEKLCYVALDFEQEMA--TAASSSSLEKSYELPDGQ--VITIGNERFRCPEALF 351
IKE+ CYV D +E + L+ + E G I +G ERF PE F
Sbjct: 240 -----IKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFF 294
Query: 352 QPSFLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEI 516
P + + E N + +D+RK LY N VLSGG+T++ +R+Q+++
Sbjct: 295 NPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDL 350
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 83.8 bits (198), Expect = 2e-17
Identities = 48/132 (36%), Positives = 72/132 (54%), Gaps = 9/132 (6%)
Frame = +1
Query: 160 SFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCP 339
S+ +R ++ + KE + V LD + A A+S + K +E PDG G ERFR
Sbjct: 243 SYEIFQKRRVIEEWKESVLDV-LDTPFDEAKASSRNP--KPFEFPDGVTHKFGQERFRIS 299
Query: 340 EALFQPSFLGMEAC---------GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGI 492
E LF PSF + G+HE Y SI+ CD ++R L N V++GGT++ PG+
Sbjct: 300 EILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGL 359
Query: 493 ADRMQKEITALA 528
++R+Q E+ LA
Sbjct: 360 SERLQAEVQRLA 371
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 48.8 bits (111), Expect(2) = 6e-11
Identities = 24/59 (40%), Positives = 37/59 (62%)
Frame = +1
Query: 382 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIA 558
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHA 383
Score = 33.1 bits (72), Expect(2) = 6e-11
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 253 AASSSSLEKSYELPDGQVITIGNERFRCPEALFQP 357
++ ++ E +E PDG + G ER++ PE LF P
Sbjct: 254 SSETTIAESEFEFPDGSRMMFGAERYQIPEHLFVP 288
Score = 27.1 bits (57), Expect = 1.9
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +1
Query: 4 RGTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY 159
+GT ++D G S IY+G+ L +G + D L + L ++ +
Sbjct: 145 KGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNAINDILAQTLRDKNF 196
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 54.0 bits (124), Expect = 1e-08
Identities = 22/77 (28%), Positives = 46/77 (59%)
Frame = +1
Query: 322 ERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 501
E+ R PE +F PS +G++ GI E + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 502 MQKEITALAPSTMKIKI 552
+++E+T++ P I +
Sbjct: 654 IKRELTSIMPVGSSINV 670
Score = 42.7 bits (96), Expect = 4e-05
Identities = 23/90 (25%), Positives = 41/90 (45%)
Frame = +1
Query: 10 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREI 189
+GIVL+ G+ SH +P+ G + R+ G + YL+K+ + SF
Sbjct: 166 SGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSFPIKMLPSQ 225
Query: 190 VRDIKEKLCYVALDFEQEMATAASSSSLEK 279
+ C+V+ D+ ++A A LE+
Sbjct: 226 AELLMHDHCHVSSDYTHDIAHALDRDILER 255
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 32.7 bits (71), Expect = 0.039
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +1
Query: 436 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP 564
K+LY++ ++ GG +PG A +++ I + + I +I PP
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPP 569
Score = 27.1 bits (57), Expect = 1.9
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +1
Query: 19 VLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 165
V+D G + + EG +P++ ++++ G D+T MK+L + +
Sbjct: 295 VVDMGAQKTSISCVEEGVVVPNSRIKINYGGDDITLLFMKLLMRSHFPY 343
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 27.5 bits (58), Expect = 1.5
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 1 ARGTGI-VLDSGDGVSHTVPIYEGYALP 81
A+G GI +G G+ H + + +GYA+P
Sbjct: 147 AKGQGIDFYPAGRGIGHQIMVEQGYAMP 174
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 27.1 bits (57), Expect = 1.9
Identities = 19/59 (32%), Positives = 25/59 (42%)
Frame = -3
Query: 501 TVGNTRVHGGTTRQYCVGVQVFTDVNVTLHDGVVCRLVDATSFHTQERGLEESLWATEP 325
T+G+ +GG GV V T VTLH G C + D T L+ + W P
Sbjct: 227 TLGDDWPNGGEI-DIVEGVNVGTSNQVTLHTGDGCEMEDIKRVMT-GTALQTNCWVDAP 283
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 26.6 bits (56), Expect = 2.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -3
Query: 534 GWSEGCDFLLHTVGNTRVHGGT 469
GW+ D +LH G V GGT
Sbjct: 240 GWTTPKDLILHLAGKLTVRGGT 261
>SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 287
Score = 26.2 bits (55), Expect = 3.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 498 PYAEGNHSPRSIHDEDQNH 554
P++ NHSPR IH +NH
Sbjct: 172 PFSCLNHSPRQIHKTVRNH 190
>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 577
Score = 25.0 bits (52), Expect = 7.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 23 WIPAMVYPTQYPSTRVTPY 79
WIP MVYP + T+ TP+
Sbjct: 521 WIPVMVYP--FIDTKQTPF 537
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 25.0 bits (52), Expect = 7.7
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -3
Query: 429 VNVTLHDGVVCRLVDATSFHTQERGLEESLWATEPFV 319
VN T HDG V + T + Q R +SL + EP V
Sbjct: 610 VNATYHDGTVRYNLFNTYGYDQSRVTYDSLTSIEPNV 646
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,378,240
Number of Sequences: 5004
Number of extensions: 46547
Number of successful extensions: 165
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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