Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_K13
         (566 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             227   5e-62
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    25   0.40 
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   3.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   6.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   6.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   6.5  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              21   8.6  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   8.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.6  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  227 bits (556), Expect = 5e-62
 Identities = 108/108 (100%), Positives = 108/108 (100%)
 Frame = +1

Query: 241 EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC 420
           EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC
Sbjct: 1   EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC 60

Query: 421 DVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP 564
           DVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP
Sbjct: 61  DVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP 108


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 25.4 bits (53), Expect = 0.40
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +2

Query: 509 RKSQPSLHPR*RSKSSRHQ 565
           ++SQP +HPR + ++ +HQ
Sbjct: 215 QQSQPGMHPRQQQQAQQHQ 233


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +1

Query: 403 NSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKI 552
           N  +K D DI++  Y + V      MYP  +  M+K I+    +  KI I
Sbjct: 342 NKELKYD-DIKEMEYLDKVFKETLRMYPPASILMRKAISDYTFNDTKITI 390


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 352 QPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVL 462
           + +FLG+    +   +YN +   D  + KDL+   +L
Sbjct: 328 ETTFLGLIRLIVLNLSYNMLTHIDARMFKDLFFLQIL 364


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 5/10 (50%), Positives = 6/10 (60%)
 Frame = +3

Query: 465 WWYHHVPWYC 494
           WW H + W C
Sbjct: 526 WWSHVLGWLC 535


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 5/10 (50%), Positives = 6/10 (60%)
 Frame = +3

Query: 465 WWYHHVPWYC 494
           WW H + W C
Sbjct: 579 WWSHVLGWLC 588


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/40 (22%), Positives = 18/40 (45%)
 Frame = +3

Query: 255 CLQQLPREVLRTPRRSSHHNRKRKVPLPRGSLPALVLGYG 374
           C++  P   +   RR  H      +P+P+ +   ++  YG
Sbjct: 32  CVRVSPVITIEPRRRKFHKPITLTIPVPQAANKGMINQYG 71


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 386 MPQASIPKNEGWKRASGQRNLSFPIVMT 303
           + Q  IP +      +G+RN+  PIV +
Sbjct: 165 LKQVKIPHDIAINSTTGKRNVVTPIVQS 192


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 43  SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKI 141
           +H +  Y GY  P   +  D A  + T+  MK+
Sbjct: 187 NHQLISYAGYKNPDGTIIGDPANIEFTELCMKL 219


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,220
Number of Sequences: 438
Number of extensions: 3551
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)