Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_K12
(533 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce... 164 8e-42
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 104 1e-23
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi... 98 8e-22
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 98 8e-22
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 86 4e-18
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 79 5e-16
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch... 28 1.0
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 2.3
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 27 2.3
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa... 26 3.1
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun... 26 4.1
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p... 26 4.1
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy... 25 5.4
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 25 9.4
>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 760
Score = 164 bits (398), Expect = 8e-42
Identities = 85/179 (47%), Positives = 110/179 (61%), Gaps = 4/179 (2%)
Frame = +3
Query: 9 ISIAKAGIMTCLNARVSILAAANPAYGRYNPKRTIEQNIQLPAALLSRFDLLWLIQDKPN 188
ISI+KAGI T LNAR SILAAANP YGRYNPK NI LPAALLSRFD+L+LI D P+
Sbjct: 489 ISISKAGITTTLNARTSILAAANPLYGRYNPKVAPIHNINLPAALLSRFDILFLILDTPS 548
Query: 189 REKDLELAKHIAYVHQHSTQPPSETRALSMRLVRRYVALTKRKQPVVPTALADYIVSSYV 368
RE D LA+H+ YVH H+ QP + L ++R Y++ ++ +PVVP + DY+ +YV
Sbjct: 549 RETDEHLAQHVTYVHMHNEQPKMDFEPLDPNMIRHYISSARQYRPVVPKDVCDYVTGAYV 608
Query: 369 ELR----REARNARDVTFTSARNXXXXXXXXXXXXXXXXSDVVEKEDVSEAIRLVEMSK 533
+LR R+ N R T+ R S+ VE DV EA+RL+ +SK
Sbjct: 609 QLRQNQKRDEANERQFAHTTPRTLLAILRMGQALARLRFSNRVEIGDVDEALRLMSVSK 667
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 104 bits (249), Expect = 1e-23
Identities = 60/177 (33%), Positives = 94/177 (53%), Gaps = 5/177 (2%)
Frame = +3
Query: 9 ISIAKAGIMTCLNARVSILAAANPAYGRYNPKRTIEQNIQLPAALLSRFDLLWLIQDKPN 188
+++AKAGI+T LNAR SILA+ANP +YNP + +NI LP LLSRFDL++LI D+ +
Sbjct: 631 VTVAKAGIITTLNARTSILASANPIGSKYNPDLPVTKNIDLPPTLLSRFDLVYLILDRVD 690
Query: 189 REKDLELAKHIAYVHQHST-QPPSETRALSMRLVRRYVALTKRK-QPVVPTALADYIVSS 362
D +LA HI ++ T + ++ S+ + Y+ + PV+ A +V++
Sbjct: 691 ETLDRKLANHIVSMYMEDTPEHATDMEVFSVEFLTSYITYARNNINPVISEEAAKELVNA 750
Query: 363 YVELRR---EARNARDVTFTSARNXXXXXXXXXXXXXXXXSDVVEKEDVSEAIRLVE 524
YV +R+ + R + + R +VVE DV EA RL++
Sbjct: 751 YVGMRKLGEDVRASEKRITATTRQLESMIRLSEAHAKMHLRNVVEVGDVLEAARLIK 807
>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 97.9 bits (233), Expect = 8e-22
Identities = 59/180 (32%), Positives = 94/180 (52%), Gaps = 10/180 (5%)
Frame = +3
Query: 9 ISIAKAGIMTCLNARVSILAAANPAYGRYNPKRTIEQNIQLPAALLSRFDLLWLIQDKPN 188
ISIAKAGI T LN+R S+LAAANP +GRY+ +T +NI + +LSRFD++++++D+ +
Sbjct: 458 ISIAKAGITTILNSRTSVLAAANPIFGRYDDMKTPGENIDFQSTILSRFDMIFIVKDEHD 517
Query: 189 REKDLELAKHIAYVHQHSTQPPSETRALS---MRLVRRYVALTKRK-QPVVPTALADYIV 356
KD +A+H+ +H + Q SET A+ RRY+ + K P + A+ +
Sbjct: 518 ETKDRNIARHVINLHT-NLQESSETLAIGEIPFDKFRRYINYCRHKCAPNLDAEAAEKLS 576
Query: 357 SSYVELRREAR------NARDVTFTSARNXXXXXXXXXXXXXXXXSDVVEKEDVSEAIRL 518
S +V +R+ N+R + R S + + +EAIRL
Sbjct: 577 SQFVAIRKRVHQSEQDSNSRSTIPITVRQLEAIIRITESLAKMSLSPIASEAHATEAIRL 636
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 97.9 bits (233), Expect = 8e-22
Identities = 53/125 (42%), Positives = 73/125 (58%)
Frame = +3
Query: 9 ISIAKAGIMTCLNARVSILAAANPAYGRYNPKRTIEQNIQLPAALLSRFDLLWLIQDKPN 188
ISIAKAGI LNAR SILAAANP GRYN K T+ NI + A ++SRFDL +++ D+ N
Sbjct: 562 ISIAKAGIQATLNARTSILAAANPIGGRYNRKTTLRNNINMSAPIMSRFDLFFVVLDECN 621
Query: 189 REKDLELAKHIAYVHQHSTQPPSETRALSMRLVRRYVALTKRKQPVVPTALADYIVSSYV 368
D LAKHI +H+ + + S ++RY+ + +P + T IV Y
Sbjct: 622 ESVDRHLAKHIVDIHR--LRDDAMQPEFSTEQLQRYIRYARTFKPKLNTESCAEIVKKYK 679
Query: 369 ELRRE 383
+LR +
Sbjct: 680 QLRMD 684
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 85.8 bits (203), Expect = 4e-18
Identities = 38/77 (49%), Positives = 59/77 (76%)
Frame = +3
Query: 9 ISIAKAGIMTCLNARVSILAAANPAYGRYNPKRTIEQNIQLPAALLSRFDLLWLIQDKPN 188
++IAKAGI T LNAR S++AAANP YG+Y+ ++ QNI LP ++LSRFDLL+++ D +
Sbjct: 442 VTIAKAGIHTSLNARCSVIAAANPIYGQYDIRKDPHQNIALPDSMLSRFDLLFIVTDDID 501
Query: 189 REKDLELAKHIAYVHQH 239
+KD L++H+ +H++
Sbjct: 502 DKKDRALSEHVLRMHRY 518
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 78.6 bits (185), Expect = 5e-16
Identities = 57/187 (30%), Positives = 90/187 (48%), Gaps = 16/187 (8%)
Frame = +3
Query: 9 ISIAKAGIMTCLNARVSILAAANPAYGRYNPKRTIEQNIQLPAALLSRFDLLWLIQDKPN 188
ISI+KAGI+T L AR +I+AAANP GRYN QN++L +LSRFD+L +++D N
Sbjct: 620 ISISKAGIVTTLQARCTIIAAANPIGGRYNTTIPFNQNVELTEPILSRFDILQVVKDTVN 679
Query: 189 REKDLELAKHIAYVHQHS-----------TQPPSET----RALSMRLVRRYVALTKRKQ- 320
E D +LA + H S + P+ET + + L+R+Y+ + K
Sbjct: 680 PEIDEQLANFVVSSHIRSHPAFDPNMDVLKKVPTETGIDAKPIPQDLLRKYIHFAREKVF 739
Query: 321 PVVPTALADYIVSSYVELRREARNARDVTFTSARNXXXXXXXXXXXXXXXXSDVVEKEDV 500
P + + I Y ++RRE+ T R+ S+ V +
Sbjct: 740 PRLQQMDEEKISRLYSDMRRESLATGSYPIT-VRHLESAIRLSEAFAKMQLSEFVRPSHI 798
Query: 501 SEAIRLV 521
+AI+++
Sbjct: 799 DKAIQVI 805
>SPCC4F11.04c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 27.9 bits (59), Expect = 1.0
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +3
Query: 261 TRALSMRLVRRYVALTKRKQPVVPTALAD 347
++ L R V+R+V +KRKQP +P AL +
Sbjct: 316 SKLLDSRYVQRFVT-SKRKQPTLPLALQE 343
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 2.3
Identities = 22/118 (18%), Positives = 48/118 (40%)
Frame = -2
Query: 487 STTSDNLSRASAVERRSMASRLRADVKVTSRALRASRRNSTYEETM*SASAVGTTGCLRF 308
+TTS N + +SA +S + +S +L +S NST + S+S ++
Sbjct: 59 ATTSYNYNTSSASSSSLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSS 118
Query: 307 VSATYXXXXXXXXXRVSLGGWVECWCTYAMCLANSKSFSRLGLSCMSQSRSKRESKAA 134
++++ ++ T + ++S + S L S + + S + +A
Sbjct: 119 LASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATPTSSA 176
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 26.6 bits (56), Expect = 2.3
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = -2
Query: 523 STSLIASETSSFSTTSDNLSRASAVERRSMA-SRLRADVKVTSRALRASRRNSTYEETM* 347
S+S S TSS S++S + S +S+ S + S R+ + TS S ++S+Y T+
Sbjct: 136 SSSATPSTTSSSSSSSSSSSSSSSKSSSSSSKSSSRSSSRTTSHR-TTSHKSSSYRPTVF 194
Query: 346 SASAVGTTGCLRFVSATY 293
+ + + TY
Sbjct: 195 PYTTISHYNITNATNGTY 212
>SPBC418.02 |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 3.1
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -2
Query: 235 WCTYAMCLANSK 200
WCTY +CLA+ K
Sbjct: 366 WCTYCLCLAHYK 377
>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1165
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 326 DGLLAFRERDVPPDQTHGE 270
D L++ ERD+ PD TH E
Sbjct: 669 DSLISVYERDITPDTTHLE 687
>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 467
Score = 25.8 bits (54), Expect = 4.1
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = +1
Query: 85 TAGTIRNEPSSKTYSCPPLCSHVSTYFGSYRTNLIVKRI*SWLSTLRTCTSTRPSRQARR 264
T+ T + SK S P+ + S YF YR NL W + C++ + ++
Sbjct: 30 TSSTGIYQMQSKVRSLVPVLTERSDYFSYYRVNLYRSSCPLWENDNAMCSNQGCAVKSLN 89
Query: 265 ALS-PCVW 285
+ P VW
Sbjct: 90 EIEIPKVW 97
>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 764
Score = 25.4 bits (53), Expect = 5.4
Identities = 15/52 (28%), Positives = 20/52 (38%)
Frame = -3
Query: 225 TQCA*PTLNPFHD*VCPV*AKVGRNVRAKRRATVCFARWFVSDCTGRTRGWP 70
T C P L H P ++ + A + W DC +TRGWP
Sbjct: 692 TSCIGPGLFDIHSPRVPPVSEFKERIDAIVKHVPKDHLWLNPDCGLKTRGWP 743
>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 753
Score = 24.6 bits (51), Expect = 9.4
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +1
Query: 94 TIRNEPSSKTYSCPPLCSHVSTYFGSYRTNLIVKRI*SWLSTLRTCTST 240
T+ + PSS +Y+CP + T S T+ V + S+++ + TS+
Sbjct: 160 TLPSLPSSPSYNCPTTLRKIHTNTSSNGTSRRVSGLGSFMAQNSSETSS 208
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,039,846
Number of Sequences: 5004
Number of extensions: 37443
Number of successful extensions: 137
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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