Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_K12
(533 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016427-3|AAB65356.1| 730|Caenorhabditis elegans Yeast mcm (li... 186 1e-47
AC025716-11|AAK39605.1| 823|Caenorhabditis elegans Yeast mcm (l... 97 5e-21
Z81039-5|CAB02770.1| 812|Caenorhabditis elegans Hypothetical pr... 91 3e-19
Z29095-13|CAA82357.1| 810|Caenorhabditis elegans Hypothetical p... 91 6e-19
Z22181-15|CAA80191.1| 810|Caenorhabditis elegans Hypothetical p... 91 6e-19
Z22181-14|CAI46590.1| 516|Caenorhabditis elegans Hypothetical p... 91 6e-19
AF326940-1|AAG49390.1| 810|Caenorhabditis elegans replication l... 91 6e-19
AL023828-7|CAA19452.1| 881|Caenorhabditis elegans Hypothetical ... 84 7e-17
Z50874-6|CAA90765.1| 759|Caenorhabditis elegans Hypothetical pr... 77 6e-15
AF100659-8|AAC68966.1| 688|Caenorhabditis elegans Hypothetical ... 31 0.69
Z78540-3|CAB01735.2| 482|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr... 28 4.8
>AF016427-3|AAB65356.1| 730|Caenorhabditis elegans Yeast mcm
(licensing factor) relatedprotein 7 protein.
Length = 730
Score = 186 bits (452), Expect = 1e-47
Identities = 94/176 (53%), Positives = 119/176 (67%), Gaps = 1/176 (0%)
Frame = +3
Query: 9 ISIAKAGIMTCLNARVSILAAANPAYGRYNPKRTIEQNIQLPAALLSRFDLLWLIQDKPN 188
ISIAKAGIMT LNAR +I+AAANPAYGRYNP R+IEQN+ LPAALLSRFDL+ L+QDK +
Sbjct: 476 ISIAKAGIMTTLNARTAIIAAANPAYGRYNPNRSIEQNVDLPAALLSRFDLILLMQDKAD 535
Query: 189 REKDLELAKHIAYVHQHSTQPPSETRAL-SMRLVRRYVALTKRKQPVVPTALADYIVSSY 365
RE D LA+HI YVHQH P E + L S+ +R Y++L K P V AL + IV +Y
Sbjct: 536 RENDKILAEHITYVHQHGCHPNREKKDLISLETLREYISLCKTYTPTVDPALRERIVEAY 595
Query: 366 VELRREARNARDVTFTSARNXXXXXXXXXXXXXXXXSDVVEKEDVSEAIRLVEMSK 533
VE+RR+AR + D TF S R S +V++ DV EA+RL++ +K
Sbjct: 596 VEMRRDARYSSDPTFVSPRMILGIVRMATARAKLRLSTIVDESDVEEALRLMQFAK 651
>AC025716-11|AAK39605.1| 823|Caenorhabditis elegans Yeast mcm
(licensing factor) relatedprotein 4 protein.
Length = 823
Score = 97.5 bits (232), Expect = 5e-21
Identities = 57/171 (33%), Positives = 86/171 (50%), Gaps = 1/171 (0%)
Frame = +3
Query: 9 ISIAKAGIMTCLNARVSILAAANPAYGRYNPKRTIEQNIQLPAALLSRFDLLWLIQDKPN 188
+SIAKAGI+ LNAR S+LAAANP ++N +TI +NI LP LLSRFDL++LI D +
Sbjct: 555 LSIAKAGIICQLNARASVLAAANPVDSKWNRNKTIVENITLPHTLLSRFDLIFLIVDAQD 614
Query: 189 REKDLELAKHIAYVHQHSTQPPSETRALSMRLVRRYVALTKRK-QPVVPTALADYIVSSY 365
+D L H+ ++ + +T + M L+R Y+A K P + + +I+ Y
Sbjct: 615 EMQDRRLGNHLVSLYFENDGNQEKTEHVDMNLLRDYIAYAKANIHPKLSEEASQFIIEKY 674
Query: 366 VELRREARNARDVTFTSARNXXXXXXXXXXXXXXXXSDVVEKEDVSEAIRL 518
+ +R+ +T R S V +DV +A L
Sbjct: 675 LFMRKAGAQHGQIT-AYPRQLESLIRLSEAHAKIRLSQEVSVDDVEKAFTL 724
>Z81039-5|CAB02770.1| 812|Caenorhabditis elegans Hypothetical
protein C25D7.6 protein.
Length = 812
Score = 91.5 bits (217), Expect = 3e-19
Identities = 42/91 (46%), Positives = 65/91 (71%)
Frame = +3
Query: 6 RISIAKAGIMTCLNARVSILAAANPAYGRYNPKRTIEQNIQLPAALLSRFDLLWLIQDKP 185
R++I+KAGI LNAR S+LAAANP YGRYNP ++ +NI + +LLSRFDL++++ D+
Sbjct: 433 RVTISKAGIHAKLNARCSVLAAANPVYGRYNPFKSPMENIGMQDSLLSRFDLIFVLLDEH 492
Query: 186 NREKDLELAKHIAYVHQHSTQPPSETRALSM 278
+ +KD +A+H+ +H + TQ ++ L M
Sbjct: 493 DADKDANVAEHVLKLHTYRTQGEADGTVLPM 523
Score = 38.3 bits (85), Expect = 0.003
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 5/116 (4%)
Frame = +3
Query: 198 DLELAKHIAYVHQHSTQPPS--ETRALSMRLVRRYVALTKRKQPVVPTALADYIVSSYVE 371
++E K + +++ +TQ +T+ L+M +R+Y+ L + QP + +YI Y +
Sbjct: 534 NMETKKASSSIYEENTQWAGIQDTKILTMDFMRKYIHLARSVQPKLTDEATEYISEVYAD 593
Query: 372 LRREARNARDVTFT---SARNXXXXXXXXXXXXXXXXSDVVEKEDVSEAIRLVEMS 530
+R D T +AR S VE+ED +A L+ +
Sbjct: 594 IRSFDITKTDQERTMPVTARQLETLIRLSTAIAKARFSKKVEREDTEKAYNLLHFA 649
>Z29095-13|CAA82357.1| 810|Caenorhabditis elegans Hypothetical
protein ZK632.1a protein.
Length = 810
Score = 90.6 bits (215), Expect = 6e-19
Identities = 45/128 (35%), Positives = 73/128 (57%)
Frame = +3
Query: 9 ISIAKAGIMTCLNARVSILAAANPAYGRYNPKRTIEQNIQLPAALLSRFDLLWLIQDKPN 188
ISI KAG+ LNAR SILAAANP GRY+ R ++ N+Q+ A ++SRFDL +++ D+ N
Sbjct: 483 ISITKAGVKATLNARASILAAANPVNGRYDRSRPLKYNVQMSAPIMSRFDLFFVLVDECN 542
Query: 189 REKDLELAKHIAYVHQHSTQPPSETRALSMRLVRRYVALTKRKQPVVPTALADYIVSSYV 368
D +A+ I H+ ++ + +++Y+A + +P + A+ +V Y
Sbjct: 543 EVTDYAIARRILDNHRAISEHTERDSVYKIDDIKKYIAFARCFKPKISDKAAETLVREYK 602
Query: 369 ELRREARN 392
+LR N
Sbjct: 603 KLRMSDSN 610
>Z22181-15|CAA80191.1| 810|Caenorhabditis elegans Hypothetical
protein ZK632.1a protein.
Length = 810
Score = 90.6 bits (215), Expect = 6e-19
Identities = 45/128 (35%), Positives = 73/128 (57%)
Frame = +3
Query: 9 ISIAKAGIMTCLNARVSILAAANPAYGRYNPKRTIEQNIQLPAALLSRFDLLWLIQDKPN 188
ISI KAG+ LNAR SILAAANP GRY+ R ++ N+Q+ A ++SRFDL +++ D+ N
Sbjct: 483 ISITKAGVKATLNARASILAAANPVNGRYDRSRPLKYNVQMSAPIMSRFDLFFVLVDECN 542
Query: 189 REKDLELAKHIAYVHQHSTQPPSETRALSMRLVRRYVALTKRKQPVVPTALADYIVSSYV 368
D +A+ I H+ ++ + +++Y+A + +P + A+ +V Y
Sbjct: 543 EVTDYAIARRILDNHRAISEHTERDSVYKIDDIKKYIAFARCFKPKISDKAAETLVREYK 602
Query: 369 ELRREARN 392
+LR N
Sbjct: 603 KLRMSDSN 610
>Z22181-14|CAI46590.1| 516|Caenorhabditis elegans Hypothetical
protein ZK632.1b protein.
Length = 516
Score = 90.6 bits (215), Expect = 6e-19
Identities = 45/128 (35%), Positives = 73/128 (57%)
Frame = +3
Query: 9 ISIAKAGIMTCLNARVSILAAANPAYGRYNPKRTIEQNIQLPAALLSRFDLLWLIQDKPN 188
ISI KAG+ LNAR SILAAANP GRY+ R ++ N+Q+ A ++SRFDL +++ D+ N
Sbjct: 189 ISITKAGVKATLNARASILAAANPVNGRYDRSRPLKYNVQMSAPIMSRFDLFFVLVDECN 248
Query: 189 REKDLELAKHIAYVHQHSTQPPSETRALSMRLVRRYVALTKRKQPVVPTALADYIVSSYV 368
D +A+ I H+ ++ + +++Y+A + +P + A+ +V Y
Sbjct: 249 EVTDYAIARRILDNHRAISEHTERDSVYKIDDIKKYIAFARCFKPKISDKAAETLVREYK 308
Query: 369 ELRREARN 392
+LR N
Sbjct: 309 KLRMSDSN 316
>AF326940-1|AAG49390.1| 810|Caenorhabditis elegans replication
licensing factor MCM2/3/5-type protein protein.
Length = 810
Score = 90.6 bits (215), Expect = 6e-19
Identities = 45/128 (35%), Positives = 73/128 (57%)
Frame = +3
Query: 9 ISIAKAGIMTCLNARVSILAAANPAYGRYNPKRTIEQNIQLPAALLSRFDLLWLIQDKPN 188
ISI KAG+ LNAR SILAAANP GRY+ R ++ N+Q+ A ++SRFDL +++ D+ N
Sbjct: 483 ISITKAGVKATLNARASILAAANPVNGRYDRSRPLKYNVQMSAPIMSRFDLFFVLVDECN 542
Query: 189 REKDLELAKHIAYVHQHSTQPPSETRALSMRLVRRYVALTKRKQPVVPTALADYIVSSYV 368
D +A+ I H+ ++ + +++Y+A + +P + A+ +V Y
Sbjct: 543 EVTDYAIARRILDNHRAISEHTERDSVYKIDDIKKYIAFARCFKPKISDKAAETLVREYK 602
Query: 369 ELRREARN 392
+LR N
Sbjct: 603 KLRMSDSN 610
>AL023828-7|CAA19452.1| 881|Caenorhabditis elegans Hypothetical
protein Y17G7B.5a protein.
Length = 881
Score = 83.8 bits (198), Expect = 7e-17
Identities = 58/192 (30%), Positives = 93/192 (48%), Gaps = 21/192 (10%)
Frame = +3
Query: 9 ISIAKAGIMTCLNARVSILAAANPAYGRYNPKRTIEQNIQLPAALLSRFDLLWLIQDKPN 188
ISI+KAGI+T L+AR +++AA+NP GRYNP RT +N+ L +LSRFD+L +I+D +
Sbjct: 584 ISISKAGIVTSLHARCTVIAASNPIGGRYNPTRTFAENVDLTEPILSRFDVLCVIRDSVD 643
Query: 189 REKDLELAKHIAYVHQHSTQPP--------------------SETRALSMRLVRRYVALT 308
+D LAK + V H T P + R + L+R+Y+
Sbjct: 644 SVEDERLAKFV--VGNHRTHHPDAKKIVKEGDELEEDQMDERTGVRLIPQDLLRKYIIYA 701
Query: 309 KRK-QPVVPTALADYIVSSYVELRREARNARDVTFTSARNXXXXXXXXXXXXXXXXSDVV 485
+ K P +P ++ + + ++R+E+ V T R+ V
Sbjct: 702 REKCHPTLPEQHSEKFSNIFAQMRKESMATGSVAIT-VRHVESMIRLSEAHAKLHLRSYV 760
Query: 486 EKEDVSEAIRLV 521
ED + AIR++
Sbjct: 761 NDEDCAAAIRVM 772
>Z50874-6|CAA90765.1| 759|Caenorhabditis elegans Hypothetical
protein R10E4.4 protein.
Length = 759
Score = 77.4 bits (182), Expect = 6e-15
Identities = 38/79 (48%), Positives = 55/79 (69%)
Frame = +3
Query: 9 ISIAKAGIMTCLNARVSILAAANPAYGRYNPKRTIEQNIQLPAALLSRFDLLWLIQDKPN 188
ISIAKAGI T LN+R S+LAAAN YGR++ R + NI +LSRFD++++++D +
Sbjct: 466 ISIAKAGITTTLNSRCSVLAAANSVYGRWDESRG-DDNIDFMPTILSRFDMIYIVKDTHD 524
Query: 189 REKDLELAKHIAYVHQHST 245
KD LAKH+ VH +++
Sbjct: 525 VLKDATLAKHVIEVHVNAS 543
>AF100659-8|AAC68966.1| 688|Caenorhabditis elegans Hypothetical
protein F58E2.3 protein.
Length = 688
Score = 30.7 bits (66), Expect = 0.69
Identities = 19/64 (29%), Positives = 27/64 (42%)
Frame = +1
Query: 79 PRTAGTIRNEPSSKTYSCPPLCSHVSTYFGSYRTNLIVKRI*SWLSTLRTCTSTRPSRQA 258
P+ +RN SSK C LC+ L++K I S L L C R SR
Sbjct: 293 PKACEELRNVQSSKELECTSLCTS-ELSIKVLHNGLLMKNILSHLGRLDICRLRRTSRGV 351
Query: 259 RRAL 270
++ +
Sbjct: 352 QKCV 355
>Z78540-3|CAB01735.2| 482|Caenorhabditis elegans Hypothetical
protein C33G3.5 protein.
Length = 482
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +3
Query: 168 LIQDKPNREKDLELAKHIAYVHQHSTQPPSETRALSMRL 284
+++D NR+K LE +H+ H++ T S+T L+ +L
Sbjct: 184 MLEDN-NRQKLLEFGRHLLDSHKNGTLSTSDTLELNKKL 221
>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical protein
F46C3.3 protein.
Length = 2557
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/63 (23%), Positives = 28/63 (44%)
Frame = +3
Query: 87 GRYNPKRTIEQNIQLPAALLSRFDLLWLIQDKPNREKDLELAKHIAYVHQHSTQPPSETR 266
G+ P+ E +Q + + R+ L + D P R + L + I+ H+H + P
Sbjct: 1373 GKLRPEGYYEPPVQTYSPVPPRYPTLRRVDDSPLRSRAKSLPRIISPRHEHFVRRPHSRN 1432
Query: 267 ALS 275
+ S
Sbjct: 1433 SYS 1435
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,675,689
Number of Sequences: 27780
Number of extensions: 223352
Number of successful extensions: 821
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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