Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_K12
         (533 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    27   0.091
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   4.5  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 27.5 bits (58), Expect = 0.091
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -2

Query: 247 WVECWCTYAMCLANSKSFSRLGLSCMSQSRSKRESKAAGNC 125
           W+  W  +  CLA  +SF           R +R+ +AAGNC
Sbjct: 422 WIPKWRQFLYCLAGDESF-----------RKRRQREAAGNC 451


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 134 GQLYVLLDGSFRIVPAVRGV 75
           GQ  +L D S R  PA+RGV
Sbjct: 230 GQQELLQDFSKRFSPAIRGV 249


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +3

Query: 213  KHIAYVHQHSTQPPSETRALSMRLVRRY 296
            KHI   H   T    E   LS+R   RY
Sbjct: 1086 KHIIQTHGEMTDKQVEAYMLSLRDENRY 1113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,548
Number of Sequences: 438
Number of extensions: 2761
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)