Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_K09
         (139 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    28   0.15 
SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox...    26   0.78 
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    25   1.0  
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc...    25   1.4  
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    25   1.8  
SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|ch...    25   1.8  
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo...    24   2.4  
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    24   2.4  
SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy...    24   3.2  
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    24   3.2  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    23   4.2  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   7.3  
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch...    23   7.3  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    23   7.3  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    23   7.3  
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy...    22   9.6  

>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 28.3 bits (60), Expect = 0.15
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 4   RGCNRRRKKTAIAEERRLQSPKKEDCNRRRK--KTAIAEERRLQSPK 138
           R    R +K    E +RL+   KE+   ++K  K   AEE+RLQ  +
Sbjct: 708 RAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKARKAEEKRLQKER 754



 Score = 25.4 bits (53), Expect = 1.0
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +3

Query: 6   RLQSPKKEDRNRRRK--KTAIAEERRLQSPKKEDCNRRRKKTAIAE 137
           RL+   KE++  ++K  K   AEE+RLQ  + +   +  +++A A+
Sbjct: 724 RLKKLAKEEKRLKKKEEKARKAEEKRLQKERAKYAKQMSRESAHAD 769



 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/34 (26%), Positives = 21/34 (61%)
 Frame = +1

Query: 16  RRRKKTAIAEERRLQSPKKEDCNRRRKKTAIAEE 117
           ++ +K   AEE+RLQ  + +   +  +++A A++
Sbjct: 737 KKEEKARKAEEKRLQKERAKYAKQMSRESAHADQ 770


>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
           Etp1/ cytochrome oxidase cofactor Cox15,
           fusion|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 631

 Score = 25.8 bits (54), Expect = 0.78
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 138 LRRLQSSFFGDCSLLSSAIAVFFLRRLQSS 49
           L R ++ F  DC    ++   FF RRL +S
Sbjct: 49  LSRTKNLFLNDCKFNKNSFEKFFARRLSNS 78



 Score = 25.0 bits (52), Expect = 1.4
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 116 SSAIAVFFLRRLQSSFFGDCSLLSSAIAVFFLRRL 12
           SS +    L R ++ F  DC    ++   FF RRL
Sbjct: 41  SSVLNEINLSRTKNLFLNDCKFNKNSFEKFFARRL 75


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -3

Query: 128 CSLLSSAIAVFFLRRLQSSFFGDCSLLSSAIAVFFLRR 15
           CSLLS AI+V    +  SS       LS  + +FF  R
Sbjct: 177 CSLLSFAISVLGRNKAPSSLPFALGNLSEKVTIFFTLR 214


>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 413

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 131 DCSLLSSAIAVFFLRRLQSSFFGDCSLLSS 42
           DC + S +   FF+ + Q   F D +LL+S
Sbjct: 368 DCFISSESFQSFFILQKQFQLFQDLALLTS 397



 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 108 DCSLLSSAIAVFFLRRLQSSFFGDCGLLSS 19
           DC + S +   FF+ + Q   F D  LL+S
Sbjct: 368 DCFISSESFQSFFILQKQFQLFQDLALLTS 397


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +1

Query: 13  NRRRKKTAIAEERRLQSPKKEDCNRRRKKTAIAEERRLQSPK 138
           +++RK    +E+   ++ KKE+  +RRKK A  E++  +  K
Sbjct: 425 SKKRKSVESSEKDEDEAAKKEE--KRRKKEAKKEKKEKKEKK 464



 Score = 23.4 bits (48), Expect = 4.2
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = +3

Query: 12  QSPKKEDRNRRRKKTAIAEERRLQSPKKEDCNRRRK 119
           ++ KKE+  +RRKK A  +E++ +  KKE   +++K
Sbjct: 440 EAAKKEE--KRRKKEA-KKEKKEKKEKKEKKEKKKK 472



 Score = 23.0 bits (47), Expect = 5.5
 Identities = 13/41 (31%), Positives = 26/41 (63%)
 Frame = +2

Query: 17  AEERRPQSPKKEDCNRRRKKTAIAEERRLQSPKKEDCNRRR 139
           +E+   ++ KKE+  +RRKK A  +E++ +  KKE   +++
Sbjct: 434 SEKDEDEAAKKEE--KRRKKEA-KKEKKEKKEKKEKKEKKK 471


>SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 43  EERRLQSPKKEDCNRRRKKTAIAEERRLQS 132
           EE+ L    KEDC    +K  +   + LQS
Sbjct: 66  EEKELPKDIKEDCKTVEEKEKVVPRKPLQS 95


>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 14  IAEERRPQSPKKEDCNRRRKKT 79
           +A+  RP  P   D NRRR+K+
Sbjct: 79  LAQYFRPAPPHPNDRNRRRRKS 100


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +3

Query: 21  KKEDRNRRRKKTAIAEERRLQSPKKEDCNRRRKK 122
           KKE ++++ KK   ++++R      E+  + +KK
Sbjct: 460 KKEKKDKKEKKKEKSKKKRSADDASEEVKKSKKK 493


>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 427

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 33  RNRRRKKTAIAEERRLQSPKKE-DCNRRRKK 122
           R+R R+  A AEE RL   K+E +  +++KK
Sbjct: 277 RDRERQAFARAEEERLAKEKEEREIVQKKKK 307


>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 9/39 (23%), Positives = 22/39 (56%)
 Frame = +3

Query: 3   TRLQSPKKEDRNRRRKKTAIAEERRLQSPKKEDCNRRRK 119
           ++ +  +K+D+  ++ K    E    +SPKK+  +++ K
Sbjct: 469 SKKEKKEKKDKKHKKSKRKSEESEDGESPKKKKKSKKSK 507



 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +2

Query: 11  AIAEERRPQSPKKEDCNRRRKKTAIAEERRLQSPKKEDCNRR 136
           A  E  + +  +K+D   ++ K    E    +SPKK+  +++
Sbjct: 464 ADGESSKKEKKEKKDKKHKKSKRKSEESEDGESPKKKKKSKK 505


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 24  KEDRNRRRKKTAIAEER-RLQSPKKEDCNRRRKK 122
           +E R R  ++  I EER R +   KE+  RRR++
Sbjct: 689 REQRLREEEEKRILEERKRREKLDKEEEERRRRE 722



 Score = 23.4 bits (48), Expect = 4.2
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +3

Query: 27  EDRNRRRKKTAIAEERR---LQSPKKEDCNRRRKKTAIA 134
           E+R RR K     EERR   L   + E+  RR ++  IA
Sbjct: 703 EERKRREKLDKEEEERRRRELLEKESEEKERRLREAKIA 741


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 2   HEAAIAEERRPQSPKKEDCNRRRKKTAIAEERRLQSPKKEDCNRRR 139
           H+     E RP+S  K + +R  K     ++++ +  KKED  R R
Sbjct: 597 HKRDSKHEARPES--KHESHRESKSAE--KDKKDKKDKKEDSKRSR 638


>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 21  KKEDRNRRRKKTAIAEERRLQSPKKEDCNRRRKKTAI 131
           KK    R+R  T  + +R+ +  KKE   + +K+ +I
Sbjct: 433 KKSPPKRKRITTRASYDRQKEQRKKEYIKKVKKEASI 469


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/39 (23%), Positives = 21/39 (53%)
 Frame = +2

Query: 20  EERRPQSPKKEDCNRRRKKTAIAEERRLQSPKKEDCNRR 136
           EER   + + ++  +R     +  +RR+Q  + E+ +R+
Sbjct: 821 EERTRAAREAKEREQREMAEKLERQRRIQQERDEEISRK 859


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 23  ERRPQSPKKEDCNRRRKKTA 82
           E  PQ PKK+  +RR +K +
Sbjct: 100 EMVPQKPKKKKRSRRNRKAS 119


>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 327

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +2

Query: 20  EERRPQSPKKEDCNRRRKKTAIAEERRLQSPKKEDCNRRR 139
           +ER+ ++ KKE   + +KK    E  +   P +E   +R+
Sbjct: 287 KERKKRAEKKEQ-QKEKKKEKEKERMKAFIPPEESSKKRK 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.126    0.351 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 560,549
Number of Sequences: 5004
Number of extensions: 7736
Number of successful extensions: 67
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 26
effective length of database: 2,232,374
effective search space used: 42415106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)