Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_K08
         (528 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28971-4|AAK68668.1|  628|Caenorhabditis elegans Hypothetical pr...    33   0.13 
Z81139-8|CAB03483.2|  361|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z81062-15|CAB02950.2|  361|Caenorhabditis elegans Hypothetical p...    30   1.2  
AC006675-10|AAK84551.2|  280|Caenorhabditis elegans Serpentine r...    29   2.7  

>U28971-4|AAK68668.1|  628|Caenorhabditis elegans Hypothetical
           protein B0244.10 protein.
          Length = 628

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = +3

Query: 321 FYCTFSAIFLFYFMTRNNPTS*WIF*IIRF--TLQIIRSIVYLREKKLSKKYLSNVLLYY 494
           FYC F A++ +YF+  N     ++F + RF  ++ +I S++ L E  L  + LS    YY
Sbjct: 61  FYCLFIALYTYYFLD-NETRKHYVFVLSRFLSSILVIISLLVL-ESTLFSESLSPTFAYY 118


>Z81139-8|CAB03483.2|  361|Caenorhabditis elegans Hypothetical
           protein W05H5.7 protein.
          Length = 361

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = -1

Query: 243 YYTPFSLALF*NYL*V*NYFQMFWMTSQIELYVLVNCIMFR--LSICNIVIFFIWLSLLS 70
           Y  PF   +  + + +  Y   F + + I LYV++   +F   L I  I +F +W  L++
Sbjct: 22  YDEPFQFQILSSIIELVFYISCFHLMT-ISLYVMLKVQIFHRNLYILYIPMFCVWYGLIA 80

Query: 69  GKGLTASPNFK 37
           GK +T +   K
Sbjct: 81  GKLITIAYRLK 91


>Z81062-15|CAB02950.2|  361|Caenorhabditis elegans Hypothetical
           protein W05H5.7 protein.
          Length = 361

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = -1

Query: 243 YYTPFSLALF*NYL*V*NYFQMFWMTSQIELYVLVNCIMFR--LSICNIVIFFIWLSLLS 70
           Y  PF   +  + + +  Y   F + + I LYV++   +F   L I  I +F +W  L++
Sbjct: 22  YDEPFQFQILSSIIELVFYISCFHLMT-ISLYVMLKVQIFHRNLYILYIPMFCVWYGLIA 80

Query: 69  GKGLTASPNFK 37
           GK +T +   K
Sbjct: 81  GKLITIAYRLK 91


>AC006675-10|AAK84551.2|  280|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 57 protein.
          Length = 280

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 156 ELYVLVNCIMFRLSICNIVIFFIWLSLLSG 67
           +LY +V  +   + + N++ + IWLSL+ G
Sbjct: 63  KLYSIVGLVSTTMFVKNLIFYLIWLSLVMG 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,230,925
Number of Sequences: 27780
Number of extensions: 188728
Number of successful extensions: 363
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)