Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_K06
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.06c |trm12||tRNA methyltransferase Trm12 |Schizosaccharo...    27   2.5  
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    25   7.7  
SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase |Schizos...    25   7.7  

>SPAC4G8.06c |trm12||tRNA methyltransferase Trm12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 151 WMHLFTVFSALNSVEKKYIL*HNY 222
           W  L+T+FS  NS+EK  +L  +Y
Sbjct: 220 WAPLYTMFSRGNSIEKARVLNFSY 243


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 7/29 (24%), Positives = 17/29 (58%)
 Frame = -2

Query: 188 EFKALNTVKRCIHTNGKAMVILLQNIYKV 102
           ++KA+ T+ +    NGK   + ++ +Y +
Sbjct: 286 DYKAVETIHKIARINGKTCTLTVEELYAI 314


>SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 319 PWIAREFSYSIIISGNDREAIFSDC 393
           P+   +  YSI +SGN + A FS C
Sbjct: 279 PFEDAQTGYSIYLSGNVKNAEFSKC 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,962,504
Number of Sequences: 5004
Number of extensions: 34828
Number of successful extensions: 70
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)