Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_K06
         (567 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1318 - 26111031-26111276,26112139-26112427,26112936-261130...    31   0.85 
06_03_1034 - 27044892-27044983,27045189-27045216,27045514-270459...    30   1.5  
06_03_1061 + 27282979-27286854                                         28   6.0  
01_01_1209 - 9738501-9738516,9738703-9739161,9739389-9739608,973...    27   7.9  

>08_02_1318 -
           26111031-26111276,26112139-26112427,26112936-26113036,
           26113628-26113878,26114842-26114865,26115793-26116129
          Length = 415

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -2

Query: 557 RGCACRVAASGGDRRIDTLQPIVAGAISA 471
           R  AC V +S GDRRID +Q    GA S+
Sbjct: 240 RNIACIVVSSSGDRRIDQMQKGGGGASSS 268


>06_03_1034 -
           27044892-27044983,27045189-27045216,27045514-27045908,
           27046224-27046312,27046352-27046620,27047037-27047270
          Length = 368

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 373 EAIFSDCVWSVRSCDGTLKKRGH 441
           E++    +WS R  DGT+K RGH
Sbjct: 329 ESVHFSAMWSGRLADGTIKTRGH 351


>06_03_1061 + 27282979-27286854
          Length = 1291

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 446 KQCPRFFRVPSHDLTDHTQSEKIASRSF 363
           ++ P+F RVPS D T  T   KI  + F
Sbjct: 299 QETPKFHRVPSLDATQRTLLRKIEGKRF 326


>01_01_1209 - 9738501-9738516,9738703-9739161,9739389-9739608,
            9739708-9739831,9739927-9740635,9741826-9742132,
            9742213-9743704
          Length = 1108

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 79   NYKETACGTLYMF*SNITMALPFVWMHLFTVFSALNSV 192
            NY+  +   LY F  N T  L   W  L+T F+   ++
Sbjct: 927  NYQRMSYMILYNFYKNATFVLVLFWYVLYTAFTLTTAI 964


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,213,435
Number of Sequences: 37544
Number of extensions: 205228
Number of successful extensions: 461
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)