Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_K04
(326 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 34 0.006
SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.18
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 27 0.72
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 0.95
SPAC56F8.04c |coq2|ppt1|para-hydroxybenzoate--polyprenyltransfer... 27 0.95
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 26 1.7
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 2.2
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 25 2.2
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 2.9
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 3.8
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 3.8
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 25 3.8
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 24 5.1
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 24 5.1
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 33.9 bits (74), Expect = 0.006
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = +3
Query: 30 RVIQHLRSHTTDGATPSSTSTPSILNPLNPLFTNAGLRSAYPTGPLSP 173
RV +S+ T SS +T S +NPL + +N+G S P GPLSP
Sbjct: 598 RVPPENQSNLEHTITTSSKNTTSSINPLTAVSSNSGQSSGRP-GPLSP 644
>SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 29.1 bits (62), Expect = 0.18
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +3
Query: 57 TTDGATPSSTSTPSILNPLNPLFTNAGLRSAYPTGPLSP 173
T GA S++S P+ N L +TN S Y +GPLSP
Sbjct: 19 TAYGANASNSSVPTPDNTLVVSYTNT---SCYTSGPLSP 54
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 27.1 bits (57), Expect = 0.72
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 156 TGPLSPLSASRYHPYSKAGLPAGL 227
TGP++P+ SR HP GL + L
Sbjct: 9 TGPINPVFPSRAHPSPPLGLTSNL 32
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 0.95
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Frame = +3
Query: 6 RKEIR*F*RVIQHLRSHTTDG-ATPSSTSTPSILN-PLNPLFTN--AGLRSAY--PTGPL 167
R+EIR + R + + T G ATP+S+S PSI + P TN + S+Y P
Sbjct: 54 RQEIRYYGRAAETGGTPTYYGYATPTSSSEPSIFSESATPSETNSYSSPVSSYSDPATSQ 113
Query: 168 SPLSASRYHPYSKAGLPAGLGASA 239
P S S + P S P+ +S+
Sbjct: 114 LPSSTSFFSPTSSEYTPSSTESSS 137
>SPAC56F8.04c
|coq2|ppt1|para-hydroxybenzoate--
polyprenyltransferaseCoq2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 358
Score = 26.6 bits (56), Expect = 0.95
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +3
Query: 84 TSTPSILNPLNPLFTNAGLRSAYPTGPLSPLSASRYHPYSKAGLPAGLGA 233
T++ IL LNP G+ S P + Y+P GL G GA
Sbjct: 163 TASLGILLQLNPYTIKLGVASLVPVCIYPAMKRITYYPQVVLGLTFGYGA 212
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.8 bits (54), Expect = 1.7
Identities = 18/71 (25%), Positives = 28/71 (39%)
Frame = +3
Query: 69 ATPSSTSTPSILNPLNPLFTNAGLRSAYPTGPLSPLSASRYHPYSKAGLPAGLGASAYGA 248
++PS + T +P +P ++ S PT P ++ Y P S + P S
Sbjct: 1574 SSPSYSPTSPSYSPTSPSYSPTS-PSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSP 1632
Query: 249 FKPALGPFYSP 281
P YSP
Sbjct: 1633 SYSPTSPSYSP 1643
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.4 bits (53), Expect = 2.2
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Frame = +3
Query: 54 HTTDGATPSSTSTPSILNPLNPLFTNAGLRSAYP---TGPLSPLSASRYHPYSKAGLPAG 224
H+ + S S+ N L+ + +RS+Y T PL+P S S + P+G
Sbjct: 568 HSEKPSFADSPRKTSLRNYLSSSWRLKFMRSSYQNNETDPLNPTSGSFLRQPMQYSSPSG 627
Query: 225 LGASAYGAF 251
+ SA +F
Sbjct: 628 VSESAASSF 636
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 25.4 bits (53), Expect = 2.2
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 60 TDGATPSS-TSTPSILNPLNPLFTNAGLRSAYPTGPLSPL 176
T TPSS T TP+ ++ L + A ++Y GP PL
Sbjct: 274 TASPTPSSPTGTPNSMSKSPSLSSLASTGASYRPGPSKPL 313
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.0 bits (52), Expect = 2.9
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +3
Query: 51 SHTTDGATPSSTSTPSILNPLNP--LFTNAGLRSAYPTGPL 167
S+T+ AT SS TP+ ++PL P T AG A G L
Sbjct: 831 SYTSPYATTSSHITPADVHPLPPPSTSTTAGWNDAPMLGQL 871
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 24.6 bits (51), Expect = 3.8
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +3
Query: 162 PLSPLSASRYHPYSKAGLPAGLGASAYGAFKPALGPFYSP 281
PL+P+ A + +P + S G PA+G SP
Sbjct: 95 PLAPIGARQPNPSIPQQFSKPINESGTGTMGPAVGELTSP 134
Score = 24.6 bits (51), Expect = 3.8
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = +3
Query: 42 HLRSHTTDGATPSS---TSTPSILNPLNPLFTNAGLRSAYPTGPLS 170
H R ++ G P S S P+ L PL P+ N + + PLS
Sbjct: 175 HTRRRSSAGTDPFSPVSPSNPNFLTPLKPIDGNQEWQQSPLESPLS 220
>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 515
Score = 24.6 bits (51), Expect = 3.8
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +3
Query: 48 RSHTTDGATPSSTSTPSILNPLNPLFTNAGLRSAYPTGPLSPLSASRYHP 197
++HT ++ + S ++ LN L +A S P+G + A+ Y+P
Sbjct: 355 KTHTKQLSSSGNVSAAQSISSLNLLEISASSPSYVPSGSSFSVRANLYNP 404
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 24.6 bits (51), Expect = 3.8
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -2
Query: 259 AGLNAP*AEAPKPAGRPAFE*G*YRLAESGLSGPVGYALRSPAF 128
+G++AP A A R A + G L+ + L G +G +PA+
Sbjct: 490 SGISAPSASVDSSASRLARDFGSLSLSSNSLLGSLGGLESTPAY 533
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 24.2 bits (50), Expect = 5.1
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +3
Query: 165 LSPLSASRYHPYSKAGLPAGLGASAYGAFKPALGPFY 275
L PLS+S HP G PA Y P P++
Sbjct: 312 LIPLSSSPNHPIQPIGFPASRKTPTY--VPPIARPYF 346
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 24.2 bits (50), Expect = 5.1
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 105 NPL-NPLFTNAGLRSAYPTGPLSPLSAS 185
NPL NPLF + + + P+GP+ + S
Sbjct: 253 NPLSNPLFQPSNVPQSIPSGPMGMKTGS 280
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,188,951
Number of Sequences: 5004
Number of extensions: 20917
Number of successful extensions: 89
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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