Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_K04
(326 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr... 29 0.79
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr... 29 1.0
Z70284-13|CAB54280.1| 639|Caenorhabditis elegans Hypothetical p... 27 2.4
Z70284-11|CAA94281.1| 612|Caenorhabditis elegans Hypothetical p... 27 2.4
U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like pr... 27 3.2
U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like pr... 27 3.2
U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like pr... 27 3.2
AF025460-2|AAF02169.3| 545|Caenorhabditis elegans Prion-like-(q... 27 3.2
AB023496-1|BAA97564.1| 793|Caenorhabditis elegans kinesin like ... 27 3.2
Z81083-2|CAB03101.3| 646|Caenorhabditis elegans Hypothetical pr... 26 5.6
AF016654-4|AAB66023.1| 291|Caenorhabditis elegans Hypothetical ... 26 5.6
Z66511-7|CAD57693.1| 567|Caenorhabditis elegans Hypothetical pr... 26 7.4
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 26 7.4
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 26 7.4
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 26 7.4
AC024839-3|AAF60829.1| 308|Caenorhabditis elegans T box family ... 26 7.4
AC024839-2|AAF60830.1| 308|Caenorhabditis elegans Hypothetical ... 26 7.4
Z66497-4|CAA91284.1| 401|Caenorhabditis elegans Hypothetical pr... 25 9.7
U37532-1|AAC05308.1| 438|Caenorhabditis elegans HMG-box protein... 25 9.7
AL021492-4|CAA16384.1| 492|Caenorhabditis elegans Hypothetical ... 25 9.7
AF043703-1|AAK21504.1| 437|Caenorhabditis elegans Posterior pha... 25 9.7
>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
F55H12.3 protein.
Length = 2972
Score = 29.1 bits (62), Expect = 0.79
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +3
Query: 51 SHTTDGATPSSTSTPSILNPLNPLFTNAGLRSAYPTGPLSPLSA--SRYH 194
S TT +TPSSTS+P++ + + +T +S+ T S LS+ S +H
Sbjct: 1169 STTTPSSTPSSTSSPTLPSGSSTEYTPRATQSSTTTSYGSTLSSDFSNFH 1218
>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical protein
K10C2.1 protein.
Length = 2314
Score = 28.7 bits (61), Expect = 1.0
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 51 SHTTDGATPSSTSTPSILNPLNPLFTNAGLRSAYPTGPL 167
S T GA S+T+TPS N + +A PTGP+
Sbjct: 2226 SAPTSGAVSSTTNTPSPTNQSPVTLPPPSVATAGPTGPI 2264
>Z70284-13|CAB54280.1| 639|Caenorhabditis elegans Hypothetical
protein K07F5.13c protein.
Length = 639
Score = 27.5 bits (58), Expect = 2.4
Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 7/101 (6%)
Frame = +3
Query: 45 LRSHTTDGATPSSTSTPSIL----NPLNPLFTNAGLRSAYPTGPLSPLSA-SRYHPYSKA 209
L + + G TP+S +TPS L P + + A + P P S P+ A
Sbjct: 141 LGAGSLSGNTPTSFATPSALPGTNAPQSSFLSPANNLNVAPAAYRPPYSTFGGSTPFGAA 200
Query: 210 GLPAGLGASAYGA--FKPALGPFYSPYAMYGQRLGAAAVHQ 326
G++ +G+ KPA G F+ + G LG Q
Sbjct: 201 STGTAAGSTLFGSSTAKPATGGFFG--SSSGSTLGGLGATQ 239
Score = 26.6 bits (56), Expect = 4.2
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Frame = +3
Query: 66 GATPSSTSTPSILNPLNPLFTNAGLRSAYPTGPLSPLSASRYH---PYSKAGLPAGLGAS 236
G+T ++STPS+ N + GL T + +A P + P+ GAS
Sbjct: 41 GSTAQASSTPSLFGTTNTSTPSGGLFGKTGTSTTTTSTAGTLFGAAPTTSTATPSLFGAS 100
Query: 237 AYGAF 251
G F
Sbjct: 101 TTGLF 105
>Z70284-11|CAA94281.1| 612|Caenorhabditis elegans Hypothetical
protein K07F5.13a protein.
Length = 612
Score = 27.5 bits (58), Expect = 2.4
Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 7/101 (6%)
Frame = +3
Query: 45 LRSHTTDGATPSSTSTPSIL----NPLNPLFTNAGLRSAYPTGPLSPLSA-SRYHPYSKA 209
L + + G TP+S +TPS L P + + A + P P S P+ A
Sbjct: 114 LGAGSLSGNTPTSFATPSALPGTNAPQSSFLSPANNLNVAPAAYRPPYSTFGGSTPFGAA 173
Query: 210 GLPAGLGASAYGA--FKPALGPFYSPYAMYGQRLGAAAVHQ 326
G++ +G+ KPA G F+ + G LG Q
Sbjct: 174 STGTAAGSTLFGSSTAKPATGGFFG--SSSGSTLGGLGATQ 212
>U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like
protein protein 4,isoform c protein.
Length = 1576
Score = 27.1 bits (57), Expect = 3.2
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +3
Query: 39 QHLRSHTTDGATPSSTSTPSILNPLNPLFTNAGLRS-AYPTGPLSPLSASRYH 194
++++S T G TPS+ TP P P+ T GL +P P + + ++
Sbjct: 667 KYIQSLTAGGFTPSTPMTPGFCLP-TPITTPTGLPPFPFPANPKQSVKSKFFY 718
>U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like
protein protein 4,isoform b protein.
Length = 1610
Score = 27.1 bits (57), Expect = 3.2
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +3
Query: 39 QHLRSHTTDGATPSSTSTPSILNPLNPLFTNAGLRS-AYPTGPLSPLSASRYH 194
++++S T G TPS+ TP P P+ T GL +P P + + ++
Sbjct: 667 KYIQSLTAGGFTPSTPMTPGFCLP-TPITTPTGLPPFPFPANPKQSVKSKFFY 718
>U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like
protein protein 4,isoform a protein.
Length = 1595
Score = 27.1 bits (57), Expect = 3.2
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +3
Query: 39 QHLRSHTTDGATPSSTSTPSILNPLNPLFTNAGLRS-AYPTGPLSPLSASRYH 194
++++S T G TPS+ TP P P+ T GL +P P + + ++
Sbjct: 667 KYIQSLTAGGFTPSTPMTPGFCLP-TPITTPTGLPPFPFPANPKQSVKSKFFY 718
>AF025460-2|AAF02169.3| 545|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 41
protein.
Length = 545
Score = 27.1 bits (57), Expect = 3.2
Identities = 22/75 (29%), Positives = 33/75 (44%)
Frame = +3
Query: 57 TTDGATPSSTSTPSILNPLNPLFTNAGLRSAYPTGPLSPLSASRYHPYSKAGLPAGLGAS 236
T+ A SSTSTPS + +SA P+ P ++++ P + P +GA
Sbjct: 49 TSSSAASSSTSTPSSSSHHKKSSPPHHQKSAAPSAPPRDVTSAHAPPPPASSAPI-VGAP 107
Query: 237 AYGAFKPALGPFYSP 281
GA P P +P
Sbjct: 108 RQGA-TPQAAPATTP 121
>AB023496-1|BAA97564.1| 793|Caenorhabditis elegans kinesin like
protein KLP-4 protein.
Length = 793
Score = 27.1 bits (57), Expect = 3.2
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +3
Query: 39 QHLRSHTTDGATPSSTSTPSILNPLNPLFTNAGLRS-AYPTGPLSPLSASRYH 194
++++S T G TPS+ TP P P+ T GL +P P + + ++
Sbjct: 87 KYIQSLTAGGFTPSTPMTPGFCLP-TPITTPTGLPPFPFPANPKQSVKSKFFY 138
>Z81083-2|CAB03101.3| 646|Caenorhabditis elegans Hypothetical
protein F44F1.3 protein.
Length = 646
Score = 26.2 bits (55), Expect = 5.6
Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 13/98 (13%)
Frame = +3
Query: 72 TPSST---STPSILNPLNPLFTNAGLRSAYPTGPLSPLSASRYHPYSKAGLPAGLGASAY 242
TP ST S+ S+ NPL R G ++ LSA P + L S Y
Sbjct: 99 TPPSTDVSSSLSVYNPLTFTAYEVFQRKVGDCGLVAALSAISTKPEVIMNIFDSLQLSKY 158
Query: 243 GAFKPAL---GPF-------YSPYAMYGQRLGAAAVHQ 326
G +K L G + Y PY G R+GA + +Q
Sbjct: 159 GVYKVKLFVDGQWKTIIIDDYFPYTTDGIRIGATSGYQ 196
>AF016654-4|AAB66023.1| 291|Caenorhabditis elegans Hypothetical
protein C17A2.7 protein.
Length = 291
Score = 26.2 bits (55), Expect = 5.6
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +2
Query: 269 FLFTLCYVRTETR 307
FLF LCY+RT++R
Sbjct: 14 FLFFLCYIRTQSR 26
>Z66511-7|CAD57693.1| 567|Caenorhabditis elegans Hypothetical
protein F07A11.6d protein.
Length = 567
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 78 SSTSTPSILNPLNPLFTNAGLRSAYPTGPLSPLS 179
++ STP+ L+ L L + A L + G L+PLS
Sbjct: 50 TTASTPNPLSNLETLLSTASLANLATGGALNPLS 83
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 25.8 bits (54), Expect = 7.4
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +3
Query: 123 FTNAGLRSAYPTGPLSPLSASRYHPYSKAGLPAGLGASAYGAFKPALGPFYSPY 284
+T +GL+ A T + AS S+ + AGLG + AF AL + Y
Sbjct: 563 WTTSGLKGAATTSAGLKIGASGSDTLSEEEIKAGLGGNDTKAFFTALQEVVNSY 616
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 25.8 bits (54), Expect = 7.4
Identities = 19/70 (27%), Positives = 28/70 (40%)
Frame = +3
Query: 72 TPSSTSTPSILNPLNPLFTNAGLRSAYPTGPLSPLSASRYHPYSKAGLPAGLGASAYGAF 251
+PS + T +P +P ++ + S P+ P S+ RY P S P S
Sbjct: 1637 SPSYSPTSPSYSPTSPSYSPSS-PSYSPSSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPT 1695
Query: 252 KPALGPFYSP 281
P YSP
Sbjct: 1696 YSPTSPTYSP 1705
Score = 25.4 bits (53), Expect = 9.7
Identities = 19/70 (27%), Positives = 28/70 (40%)
Frame = +3
Query: 72 TPSSTSTPSILNPLNPLFTNAGLRSAYPTGPLSPLSASRYHPYSKAGLPAGLGASAYGAF 251
+PS + T +P +P ++ S PT P S+ Y P S + P+ S
Sbjct: 1623 SPSYSPTSPSYSPTSPSYSPTS-PSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPT 1681
Query: 252 KPALGPFYSP 281
P YSP
Sbjct: 1682 YSPTSPTYSP 1691
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 25.8 bits (54), Expect = 7.4
Identities = 19/70 (27%), Positives = 28/70 (40%)
Frame = +3
Query: 72 TPSSTSTPSILNPLNPLFTNAGLRSAYPTGPLSPLSASRYHPYSKAGLPAGLGASAYGAF 251
+PS + T +P +P ++ + S P+ P S+ RY P S P S
Sbjct: 1644 SPSYSPTSPSYSPTSPSYSPSS-PSYSPSSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPT 1702
Query: 252 KPALGPFYSP 281
P YSP
Sbjct: 1703 YSPTSPTYSP 1712
Score = 25.4 bits (53), Expect = 9.7
Identities = 19/70 (27%), Positives = 28/70 (40%)
Frame = +3
Query: 72 TPSSTSTPSILNPLNPLFTNAGLRSAYPTGPLSPLSASRYHPYSKAGLPAGLGASAYGAF 251
+PS + T +P +P ++ S PT P S+ Y P S + P+ S
Sbjct: 1630 SPSYSPTSPSYSPTSPSYSPTS-PSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPT 1688
Query: 252 KPALGPFYSP 281
P YSP
Sbjct: 1689 YSPTSPTYSP 1698
>AC024839-3|AAF60829.1| 308|Caenorhabditis elegans T box family
protein 30 protein.
Length = 308
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 108 PLNPLFTNAGLRSAYPTGPLSPLSASRYHPYS 203
P +PL+++ + YP P SP +S +PYS
Sbjct: 249 PSSPLYSSQN-QYQYPFHPYSPFDSSIPYPYS 279
>AC024839-2|AAF60830.1| 308|Caenorhabditis elegans Hypothetical
protein Y59E9AR.5 protein.
Length = 308
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 108 PLNPLFTNAGLRSAYPTGPLSPLSASRYHPYS 203
P +PL+++ + YP P SP +S +PYS
Sbjct: 249 PSSPLYSSQN-QYQYPFHPYSPFDSSIPYPYS 279
>Z66497-4|CAA91284.1| 401|Caenorhabditis elegans Hypothetical
protein K08F8.2 protein.
Length = 401
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 66 GATPSSTSTPSILNPLNPLFTNAGLRSAYPTGPLSPLSAS 185
G TP PS+ P L ++ +P GP++ L AS
Sbjct: 101 GTTP--IPQPSVTEPPTSLIIPQVAKNLFPAGPIASLQAS 138
>U37532-1|AAC05308.1| 438|Caenorhabditis elegans HMG-box protein
protein.
Length = 438
Score = 25.4 bits (53), Expect = 9.7
Identities = 22/84 (26%), Positives = 36/84 (42%)
Frame = +3
Query: 75 PSSTSTPSILNPLNPLFTNAGLRSAYPTGPLSPLSASRYHPYSKAGLPAGLGASAYGAFK 254
P S S P +++ +P ++ A L P ++P +A+ P + GA
Sbjct: 69 PMSPSFPGLMSHFSPGYSAAALPMFMPLF-MNPYAAALRSPSLMFPM---------GAMS 118
Query: 255 PALGPFYSPYAMYGQRLGAAAVHQ 326
P P + P +YG + AAA Q
Sbjct: 119 PTF-PMFPPSPVYGAAIAAAAAKQ 141
>AL021492-4|CAA16384.1| 492|Caenorhabditis elegans Hypothetical
protein Y45F10D.9 protein.
Length = 492
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 195 PYSKAGLPAGLGASAYGAFKPALGPFYSPY 284
P GL GL +FKP LGP ++PY
Sbjct: 411 PSGLPGLQTGLTNRLTPSFKPVLGP-HTPY 439
>AF043703-1|AAK21504.1| 437|Caenorhabditis elegans Posterior
pharynx defect protein 1 protein.
Length = 437
Score = 25.4 bits (53), Expect = 9.7
Identities = 22/84 (26%), Positives = 36/84 (42%)
Frame = +3
Query: 75 PSSTSTPSILNPLNPLFTNAGLRSAYPTGPLSPLSASRYHPYSKAGLPAGLGASAYGAFK 254
P S S P +++ +P ++ A L P ++P +A+ P + GA
Sbjct: 68 PMSPSFPGLMSHFSPGYSAAALPMFMPLF-MNPYAAALRSPSLMFPM---------GAMS 117
Query: 255 PALGPFYSPYAMYGQRLGAAAVHQ 326
P P + P +YG + AAA Q
Sbjct: 118 PTF-PMFPPSPVYGAAIAAAAAKQ 140
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,502,837
Number of Sequences: 27780
Number of extensions: 120018
Number of successful extensions: 405
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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