Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_K04
         (326 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   0.54 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   1.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   2.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   3.8  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   5.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   5.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   5.0  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   5.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   5.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   5.0  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    20   6.6  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    20   6.6  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     20   6.6  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    20   8.8  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                20   8.8  

>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 0.54
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +1

Query: 166 LARSQRADIILIQKLAF--PPAWEPQPTEHSSQR 261
           +AR+  A++   Q+L    PP W  +PT+ S +R
Sbjct: 686 VARNLAAEVSHTQRLVVHVPPRWIVEPTDVSVER 719



 Score = 19.8 bits (39), Expect = 8.8
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = +1

Query: 223  AWEPQPTEHSS 255
            +W+P P  HS+
Sbjct: 1127 SWQPPPNTHSN 1137


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 159 GPLSPLSASRYHPYS 203
           G  SP+S S Y PYS
Sbjct: 131 GYASPMSTSSYDPYS 145


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 13/49 (26%), Positives = 16/49 (32%)
 Frame = +3

Query: 117 PLFTNAGLRSAYPTGPLSPLSASRYHPYSKAGLPAGLGASAYGAFKPAL 263
           P+ +     S YP    SP S S          P       Y  + PAL
Sbjct: 385 PIGSGGSFPSLYPMATTSPQSQSTIQTLRPQVSPDRTSPMEYRLYNPAL 433


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 5   EERDSVILKSYSTFEKSYDRRS 70
           +E DSV+L   S   + YD +S
Sbjct: 513 QEHDSVMLGEISPHHEYYDSKS 534


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +2

Query: 263 WTFLFTLCYVRTETRRCSRPS 325
           W   FT+  VR   R C  P+
Sbjct: 22  WLPFFTMYLVRAFCRNCIHPT 42


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +2

Query: 263 WTFLFTLCYVRTETRRCSRPS 325
           W   FT+  VR   R C  P+
Sbjct: 470 WLPFFTMYLVRAFCRNCIHPT 490


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -2

Query: 109 GFRIEGVEVEEG 74
           GFR+EG+++  G
Sbjct: 413 GFRVEGIKLAHG 424


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -2

Query: 109 GFRIEGVEVEEG 74
           GFR+EG+++  G
Sbjct: 328 GFRVEGIKLAHG 339


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -2

Query: 109 GFRIEGVEVEEG 74
           GFR+EG+++  G
Sbjct: 647 GFRVEGIKLAHG 658


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 217 PPAWEPQPTEHSSQR 261
           PP W  +PT+ S +R
Sbjct: 709 PPRWIVEPTDVSVER 723



 Score = 19.8 bits (39), Expect = 8.8
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = +1

Query: 223  AWEPQPTEHSS 255
            +W+P P  HS+
Sbjct: 1131 SWQPPPNTHSN 1141


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +3

Query: 111 LNPLFTNAGLRSAYPTGPLSPLSASRYHPYSKAGLPAGLGASAYGA 248
           ++PLFT  G   A      +P+     HP  +A L A   + A  A
Sbjct: 308 ISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALFAKFPSLACAA 353


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = -2

Query: 187 RLAESGLSGPVGYALRSPAFVNNGFKGFRIEGVEVEEGV 71
           ++  SG++G V  +  + +F+N  F+     G + EE +
Sbjct: 398 KMESSGMAGRVHISNATLSFLNGEFEVEPAHGEDREEAL 436


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 8   ERDSVILKSYSTFEKSYDRRS 70
           E DSV+L   S   + YD +S
Sbjct: 212 EHDSVMLGEISPHHEYYDSKS 232


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 42  HLRSHTTDGATP 77
           HLRSH  +G  P
Sbjct: 80  HLRSHGKEGEDP 91


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 85  VEEGVAPSVV*LLKC*ITLQN 23
           +E+G + S++ +  C  TLQN
Sbjct: 125 IEQGASLSLITMELCGTTLQN 145


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,402
Number of Sequences: 438
Number of extensions: 1250
Number of successful extensions: 17
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7217694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)