Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_K02
(412 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 155 2e-39
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 155 2e-39
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 155 2e-39
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 60 1e-10
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos... 27 0.86
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch... 26 2.0
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma... 26 2.0
SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyce... 26 2.6
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom... 25 3.5
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch... 25 3.5
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 25 4.6
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 25 6.1
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 25 6.1
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 25 6.1
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 24 8.0
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 24 8.0
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 155 bits (377), Expect = 2e-39
Identities = 66/92 (71%), Positives = 80/92 (86%)
Frame = +2
Query: 110 CSHFQAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKS 289
C+ F AQVI+LNHPGQIS GY+PVLDCHTAHIACKFAE+ EK+DRR+GK E++PK +KS
Sbjct: 335 CASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKS 394
Query: 290 GDAAIVNLVPSKPLCVESFQEFPPLGRFAVRD 385
GDA I +VPSKP+CVE+F ++ PLGRFAVRD
Sbjct: 395 GDACIAKMVPSKPMCVEAFTDYAPLGRFAVRD 426
Score = 52.8 bits (121), Expect = 2e-08
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +1
Query: 7 GDNVGFNVKNVSVKELRRGYVAGDSKN 87
GDNVGFNVKNVSVK++RRG V GDSKN
Sbjct: 303 GDNVGFNVKNVSVKDIRRGNVCGDSKN 329
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 155 bits (377), Expect = 2e-39
Identities = 66/92 (71%), Positives = 80/92 (86%)
Frame = +2
Query: 110 CSHFQAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKS 289
C+ F AQVI+LNHPGQIS GY+PVLDCHTAHIACKFAE+ EK+DRR+GK E++PK +KS
Sbjct: 335 CASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKS 394
Query: 290 GDAAIVNLVPSKPLCVESFQEFPPLGRFAVRD 385
GDA I +VPSKP+CVE+F ++ PLGRFAVRD
Sbjct: 395 GDACIAKMVPSKPMCVEAFTDYAPLGRFAVRD 426
Score = 52.8 bits (121), Expect = 2e-08
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +1
Query: 7 GDNVGFNVKNVSVKELRRGYVAGDSKN 87
GDNVGFNVKNVSVK++RRG V GDSKN
Sbjct: 303 GDNVGFNVKNVSVKDIRRGNVCGDSKN 329
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 155 bits (377), Expect = 2e-39
Identities = 66/92 (71%), Positives = 80/92 (86%)
Frame = +2
Query: 110 CSHFQAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKS 289
C+ F AQVI+LNHPGQIS GY+PVLDCHTAHIACKFAE+ EK+DRR+GK E++PK +KS
Sbjct: 335 CASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKS 394
Query: 290 GDAAIVNLVPSKPLCVESFQEFPPLGRFAVRD 385
GDA I +VPSKP+CVE+F ++ PLGRFAVRD
Sbjct: 395 GDACIAKMVPSKPMCVEAFTDYAPLGRFAVRD 426
Score = 52.8 bits (121), Expect = 2e-08
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +1
Query: 7 GDNVGFNVKNVSVKELRRGYVAGDSKN 87
GDNVGFNVKNVSVK++RRG V GDSKN
Sbjct: 303 GDNVGFNVKNVSVKDIRRGNVCGDSKN 329
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 60.1 bits (139), Expect = 1e-10
Identities = 29/91 (31%), Positives = 50/91 (54%)
Frame = +2
Query: 113 SHFQAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSG 292
+ F AQ+ +L P ++ GY+ V+ HTA FA++ K+D +T + ++ P G
Sbjct: 558 TRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLD-KTNRKSKKPPMFATKG 616
Query: 293 DAAIVNLVPSKPLCVESFQEFPPLGRFAVRD 385
I L P+C+E F+++ +GRF +RD
Sbjct: 617 MKIIAELETQTPVCMERFEDYQYMGRFTLRD 647
>SPAC631.01c |acp2||F-actin capping protein beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 268
Score = 27.5 bits (58), Expect = 0.86
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -2
Query: 303 MAASPDLMDLGLSSVDLPVRRSTFS 229
++ +PDL D+ LSSVD P++ +T S
Sbjct: 27 LSVAPDLADVLLSSVDQPLKVNTCS 51
>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 26.2 bits (55), Expect = 2.0
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = -2
Query: 324 LEGTRLTMAASPDLMDLGLSSVDLPVRRSTFSLISANLQAMWAVWQSNTGVYPF 163
LE R ++ +L+D LSSV L + + S++S+ + + + G+ PF
Sbjct: 122 LEVKRTEGVSTTELLDRLLSSVPLEIYSTPVSVLSSQIDLLRRFATDSDGLTPF 175
>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 396
Score = 26.2 bits (55), Expect = 2.0
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -2
Query: 288 DLMDLGLSSVDL--PVRRSTFSLISANLQAMWAVWQSNTGVY 169
+L LG++ + P +RST S ++ L W + N GVY
Sbjct: 316 ELSKLGVTIIGSKDPKKRSTHSYVAKILNPEWDAFLKNEGVY 357
>SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 395
Score = 25.8 bits (54), Expect = 2.6
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = +2
Query: 35 TYLSRNCAVVTLQEIRKTPPGLNFTCSHFQAQVIVLNHPGQISNGYTP 178
TY +C V + PPG+N T S Q Q + PGQ SN TP
Sbjct: 12 TYGESHCKSVGCI-VEGCPPGMNLTESDVQVQ-LTRRRPGQ-SNLTTP 56
>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 163
Score = 25.4 bits (53), Expect = 3.5
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -1
Query: 247 TTVDFLFDFGKFAGYVGCVAIQYRCVSV*YLTWV 146
T +D+LF F+ +G + Y ++V Y+ WV
Sbjct: 73 TLIDYLFFSPPFSLSIGPSLLVYLSIAVSYMLWV 106
>SPBC428.08c |clr4||histone H3 methyltransferase
Clr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 25.4 bits (53), Expect = 3.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 393 ASWSRTAKRPRGGNSWKDSTH 331
A W R +R +G NS DS H
Sbjct: 55 AEWKRRKRRLKGSNSDSDSPH 75
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 25.0 bits (52), Expect = 4.6
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +1
Query: 94 RTELHLQSLSSASHCAKSPRSNIKRIHTCIGLPH-SPHSLQICRNQRESRP 243
+TELH ++A +SP IK + C L H +P S +ES P
Sbjct: 1483 KTELHGFIRANAEMVLRSPECFIKILKDCCVLGHFTPESEHYYLELKESLP 1533
Score = 24.6 bits (51), Expect = 6.1
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = -1
Query: 358 WEFLEGLHTQGLGGNQVDNGGITRFNGFRV 269
++FL+ + + LGGN + G+T G+ +
Sbjct: 389 YDFLQFMTSSPLGGNMACSAGLTSLLGYHL 418
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 24.6 bits (51), Expect = 6.1
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 151 RSNIKRIHTCIGLPHSPHSLQIC-RNQRESRP 243
+S + I CIG+ SPH +C R Q +P
Sbjct: 106 KSGERSIPKCIGMYTSPHLRSVCERIQLNGKP 137
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 24.6 bits (51), Expect = 6.1
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -2
Query: 228 LISANLQAMWAVWQSNTGV 172
L+SA+ W +W +TGV
Sbjct: 280 LVSASFDTTWRLWDVHTGV 298
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 24.6 bits (51), Expect = 6.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 44 SRNCAVVTLQEIRKTPPGLNFTCSHFQAQVIVL 142
S+N VVT ++RK PP + + ++VL
Sbjct: 134 SKNMQVVTDSDVRKDPPRKGWKKGPYGRAIVVL 166
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 24.2 bits (50), Expect = 8.0
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -1
Query: 391 LMVTHGETTEGWEFLEGLHTQGLGGNQVDNGGITRFNGFRVVL 263
++V HG TT GW + G+ N + N G T +R++L
Sbjct: 538 MIVLHGLTTIGW--ILSRENLGIVENIMQNNG-TNLKNWRILL 577
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 24.2 bits (50), Expect = 8.0
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 140 LNHPGQISNGYTPVLDCHTAHIACK 214
L HP Q+SN +T C A AC+
Sbjct: 305 LPHPIQLSNYFTLPSSCAQADAACQ 329
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,930,697
Number of Sequences: 5004
Number of extensions: 41242
Number of successful extensions: 137
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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