Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_K02
(412 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 176 7e-47
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 175 2e-46
EF013227-1|ABK54581.1| 119|Apis mellifera elongation factor 1-a... 134 3e-34
AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor 1-a... 60 1e-11
AB204559-1|BAD89804.1| 832|Apis mellifera soluble guanylyl cycl... 23 1.4
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 22 3.1
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 21 4.1
AY703618-1|AAU12614.1| 136|Apis mellifera wingless protein. 21 5.4
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 5.4
AY222546-1|AAP69221.1| 135|Apis mellifera wingless protein. 21 5.4
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 21 7.2
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 21 7.2
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 20 9.5
DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex det... 20 9.5
DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex det... 20 9.5
DQ151547-1|ABA39280.1| 405|Apis mellifera tyramine receptor pro... 20 9.5
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 20 9.5
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 176 bits (429), Expect = 7e-47
Identities = 80/89 (89%), Positives = 85/89 (95%)
Frame = +2
Query: 119 FQAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDA 298
F AQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEK DRRTGK+TE+NPKSIKSGDA
Sbjct: 340 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDA 399
Query: 299 AIVNLVPSKPLCVESFQEFPPLGRFAVRD 385
AIV L P+KP+CVE+FQEFPPLGRFAVRD
Sbjct: 400 AIVMLQPTKPMCVEAFQEFPPLGRFAVRD 428
Score = 59.7 bits (138), Expect = 1e-11
Identities = 26/27 (96%), Positives = 27/27 (100%)
Frame = +1
Query: 7 GDNVGFNVKNVSVKELRRGYVAGDSKN 87
GDNVGFNVKN+SVKELRRGYVAGDSKN
Sbjct: 305 GDNVGFNVKNISVKELRRGYVAGDSKN 331
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 175 bits (426), Expect = 2e-46
Identities = 79/89 (88%), Positives = 84/89 (94%)
Frame = +2
Query: 119 FQAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDA 298
F AQVIVLNHPGQISNGYTPVLDCHTAHIACKFA+IKEK DRR GK+TE+NPKSIKSGDA
Sbjct: 340 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFADIKEKCDRRNGKTTEENPKSIKSGDA 399
Query: 299 AIVNLVPSKPLCVESFQEFPPLGRFAVRD 385
AIV LVPSKP+C E+FQEFPPLGRFAVRD
Sbjct: 400 AIVMLVPSKPMCAEAFQEFPPLGRFAVRD 428
Score = 60.1 bits (139), Expect = 1e-11
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +1
Query: 7 GDNVGFNVKNVSVKELRRGYVAGDSKN 87
GDNVGFNVKNVSVKELRRGYVAGDSKN
Sbjct: 305 GDNVGFNVKNVSVKELRRGYVAGDSKN 331
>EF013227-1|ABK54581.1| 119|Apis mellifera elongation factor
1-alpha protein.
Length = 119
Score = 134 bits (325), Expect = 3e-34
Identities = 62/69 (89%), Positives = 65/69 (94%)
Frame = +2
Query: 119 FQAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDA 298
F AQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEK DRRTGK+TE+NPKSIKSGDA
Sbjct: 51 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDA 110
Query: 299 AIVNLVPSK 325
AIV L P+K
Sbjct: 111 AIVMLQPTK 119
Score = 59.7 bits (138), Expect = 1e-11
Identities = 26/27 (96%), Positives = 27/27 (100%)
Frame = +1
Query: 7 GDNVGFNVKNVSVKELRRGYVAGDSKN 87
GDNVGFNVKN+SVKELRRGYVAGDSKN
Sbjct: 16 GDNVGFNVKNISVKELRRGYVAGDSKN 42
>AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor
1-alpha protein.
Length = 274
Score = 60.1 bits (139), Expect = 1e-11
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +1
Query: 7 GDNVGFNVKNVSVKELRRGYVAGDSKN 87
GDNVGFNVKNVSVKELRRGYVAGDSKN
Sbjct: 248 GDNVGFNVKNVSVKELRRGYVAGDSKN 274
>AB204559-1|BAD89804.1| 832|Apis mellifera soluble guanylyl cyclase
beta-3 protein.
Length = 832
Score = 23.0 bits (47), Expect = 1.4
Identities = 13/42 (30%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Frame = +1
Query: 97 TELHLQSLSSASHCAKSPRSNIKRIHTCIGLPHS-PHSLQIC 219
T L + + HC K HT IG S H Q C
Sbjct: 770 TSLEAEKREKSEHCEKGKEYYAASFHTDIGNSQSLAHQDQCC 811
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 3.1
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +3
Query: 234 KSTVVLVNQQRTTLNPLNLVM 296
KST V +R T+NP ++++
Sbjct: 142 KSTTTTVEVKRDTINPEDVIL 162
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 21.4 bits (43), Expect = 4.1
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -1
Query: 349 LEGLHTQGLGGNQVDNGGITRFNGFRVV 266
L LHT L N++ G FNG V+
Sbjct: 382 LYNLHTLELSDNKLRTVGAQLFNGLFVL 409
>AY703618-1|AAU12614.1| 136|Apis mellifera wingless protein.
Length = 136
Score = 21.0 bits (42), Expect = 5.4
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +2
Query: 269 NPKSIKSGDAAIVNLVPSKPLC 334
NP+ G +V L PS P C
Sbjct: 66 NPEHKPPGPKDLVYLEPSPPFC 87
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.0 bits (42), Expect = 5.4
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +1
Query: 148 PRSNIKRIHTCIGLPHSP 201
P S +R HT G+P P
Sbjct: 1067 PMSEERRQHTAEGVPEQP 1084
>AY222546-1|AAP69221.1| 135|Apis mellifera wingless protein.
Length = 135
Score = 21.0 bits (42), Expect = 5.4
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +2
Query: 269 NPKSIKSGDAAIVNLVPSKPLC 334
NP+ G +V L PS P C
Sbjct: 67 NPEHKPPGPKDLVYLEPSPPFC 88
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 20.6 bits (41), Expect = 7.2
Identities = 7/21 (33%), Positives = 14/21 (66%)
Frame = +3
Query: 234 KSTVVLVNQQRTTLNPLNLVM 296
KST+ V +R +NP ++++
Sbjct: 131 KSTITTVEVKRDIINPEDVIL 151
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 20.6 bits (41), Expect = 7.2
Identities = 7/21 (33%), Positives = 14/21 (66%)
Frame = +3
Query: 234 KSTVVLVNQQRTTLNPLNLVM 296
KST+ V +R +NP ++++
Sbjct: 142 KSTITTVEVKRDIINPEDVIL 162
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 20.2 bits (40), Expect = 9.5
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = -2
Query: 102 FSPGGVFRISCNVTTAQF 49
+ P G+F+ +C + A F
Sbjct: 101 YVPPGIFKSTCKIDIAWF 118
>DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 20.2 bits (40), Expect = 9.5
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +2
Query: 227 KEKVDRRTGKSTEDNPKSIKS 289
KE+ RT + T PK I S
Sbjct: 64 KERSQDRTERETSKEPKIISS 84
>DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 20.2 bits (40), Expect = 9.5
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +2
Query: 227 KEKVDRRTGKSTEDNPKSIKS 289
KE+ RT + T PK I S
Sbjct: 64 KERSQDRTERETSKEPKIISS 84
>DQ151547-1|ABA39280.1| 405|Apis mellifera tyramine receptor
protein.
Length = 405
Score = 20.2 bits (40), Expect = 9.5
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = +3
Query: 258 QQRTTLNPLNLVMPPLSTW 314
+ RT L+P N +P + W
Sbjct: 380 KSRTNLDPSNRKLPAPANW 398
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 20.2 bits (40), Expect = 9.5
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +3
Query: 234 KSTVVLVNQQRTTLNPLNLVM 296
KST +R T+NP ++++
Sbjct: 142 KSTTTTAEVKRDTINPEDVIL 162
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,750
Number of Sequences: 438
Number of extensions: 3031
Number of successful extensions: 20
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
- SilkBase 1999-2023 -