Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_J24
         (413 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.02 |bob1|gim5, gim5|prefoldin subunit 5 |Schizosaccharom...    74   8e-15
SPAC24C9.13c |mrp10||mitochondrial ribosomal protein subunit Mrp...    26   2.0  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   2.0  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   2.0  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    26   2.7  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    25   3.5  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    25   6.1  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    25   6.1  
SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr 2...    25   6.1  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    24   8.1  
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    24   8.1  
SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|c...    24   8.1  

>SPBC215.02 |bob1|gim5, gim5|prefoldin subunit 5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 154

 Score = 74.1 bits (174), Expect = 8e-15
 Identities = 42/93 (45%), Positives = 58/93 (62%), Gaps = 2/93 (2%)
 Frame = +2

Query: 128 VDLSKLSLPHLAQLKEQLDQELVLFQESLQTLQMAKNKFAESGESV-DKITPEVKGNPIL 304
           VDL+ LSL  L+++ +QLD EL     S   L  A+ KF E   +V D +  E  G  +L
Sbjct: 8   VDLTSLSLEQLSEVIKQLDSELEYLSTSYGQLGRAQLKFRECLANVNDAVRAENDGKEVL 67

Query: 305 VPLTSSMYVPGTI-ADIDNVVIDIGTGYYVQKA 400
           VPLTSS+YVPG +      +++DIGTGYYV+K+
Sbjct: 68  VPLTSSLYVPGKLNLGNSKLLVDIGTGYYVEKS 100


>SPAC24C9.13c |mrp10||mitochondrial ribosomal protein subunit
           Mrp10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 88

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 264 TDSPDSANLFLAICNVCRDS*NRTNSWSNCSFN*AKCGKL 145
           TD+   ANL  A+ N  + +  +T S +  +++ A+ GKL
Sbjct: 48  TDTAQCANLVAALENCMKTTHRKTKSENTINYHLARLGKL 87


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 14/47 (29%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
 Frame = +2

Query: 170 KEQLDQELVLFQESLQTLQM-AKNKFAESGESVDKITPEVKGNPILV 307
           K +L+++L+ FQE L+TL++ +     ++  S   + P ++G P+L+
Sbjct: 181 KLELNEDLLWFQE-LRTLKLKSPTNVLQTHSSQTHVYPYIRGLPVLL 226


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 14/47 (29%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
 Frame = +2

Query: 170 KEQLDQELVLFQESLQTLQM-AKNKFAESGESVDKITPEVKGNPILV 307
           K +L+++L+ FQE L+TL++ +     ++  S   + P ++G P+L+
Sbjct: 181 KLELNEDLLWFQE-LRTLKLKSPTNVLQTHSSQTHVYPYIRGLPVLL 226


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -3

Query: 243 NLFLAICNVCRDS*NRTNSWSNCSFN*AKCGKLSLLKSTCCPVEDDAILEN 91
           +LFL +  +     ++T++ S CS     CG +     TCC V    I  N
Sbjct: 5   SLFLTVLTLALSLVSKTSA-SQCSPRYGTCGGIYYDGPTCCVVGSSCIYSN 54


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -1

Query: 182 PTVPLIEPSVVNLAYLNQPAVQLKMMPFWKTITLKF 75
           PT+ L +  ++N A L+Q  +  + +PFWK++T  F
Sbjct: 636 PTITLGKNDLLN-AILSQN-LWFRSLPFWKSMTTSF 669


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
 Frame = +2

Query: 278 PEVKGN---PILVPLTSSMYVPGTIADIDNVV 364
           P + GN   P+  PLT+S   P TI   DN V
Sbjct: 386 PSLAGNQPSPLSSPLTNSNVSPSTICSPDNNV 417


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 227 FAMSAGILEIELIPGPTVPLIEPSVVNLAYLNQPA 123
           +++  G   + +IP  T P+I+P+V   A  N PA
Sbjct: 647 YSVDVGKEHMSMIPNQTAPMIQPNVPVSA--NSPA 679


>SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 304

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 179 LDQELVLFQESLQTLQMAKNKFAESGESVDKITPEVKGNPILVPLTSS 322
           LD+++    ES Q  +  K+  +     + +I    KGNPI + L+SS
Sbjct: 173 LDEQIKRAYESAQNNEDNKDGSSREQPVLHEIDLSKKGNPIQLNLSSS 220


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = +2

Query: 113 STGQQVDLSKLSLPHLAQLKEQL-DQELVLFQESLQTLQMAKNKFAESGESVDKITPEVK 289
           +TG++  L+  S  ++ + + Q+   +   F  S Q         + +  + +++  +  
Sbjct: 99  NTGKRYTLTSSSANYMTKSERQMRPPKSYDFPPSQQVRPSTSRSPSYASYNSEEVNFQSY 158

Query: 290 GNPILVPLTSSMYVP 334
            +P L+P TS MY+P
Sbjct: 159 QDPRLLPRTSQMYMP 173


>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 316 GQRYKYGISFYFWGYFIYRLSRF 248
           G  + Y + F+F G +IYR S +
Sbjct: 159 GYSFFYYLCFWFLGLYIYRSSNY 181


>SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 334

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 206 ESLQTLQMAKNKFAESGESVDKITPEVKG 292
           E L  LQ+    F +  +S+DK+   VKG
Sbjct: 56  EPLANLQLLSRYFQKFPDSIDKVFLSVKG 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,660,248
Number of Sequences: 5004
Number of extensions: 31458
Number of successful extensions: 92
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)