Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_J24
         (413 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-1|AAK29855.1|  152|Caenorhabditis elegans Hypothetical pr...    65   2e-11
AF303258-1|AAG50216.1|  152|Caenorhabditis elegans 3H288 protein.      65   2e-11
U39848-7|AAA80693.3|  230|Caenorhabditis elegans Hypothetical pr...    29   1.3  
AF022968-6|AAB69884.1|  388|Caenorhabditis elegans Dehydrogenase...    28   3.1  
Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical pr...    27   4.1  
AF000264-2|AAC71121.1|  761|Caenorhabditis elegans Half transpor...    27   5.4  
U42839-5|AAM54196.1|  133|Caenorhabditis elegans Hypothetical pr...    26   9.4  

>U00036-1|AAK29855.1|  152|Caenorhabditis elegans Hypothetical
           protein R151.9 protein.
          Length = 152

 Score = 65.3 bits (152), Expect = 2e-11
 Identities = 31/89 (34%), Positives = 54/89 (60%)
 Frame = +2

Query: 128 VDLSKLSLPHLAQLKEQLDQELVLFQESLQTLQMAKNKFAESGESVDKITPEVKGNPILV 307
           V LS+LSL  L +L++  +QEL  FQES   L+    +  +S  ++D +     G+  L+
Sbjct: 8   VPLSELSLQQLGELQKNCEQELNFFQESFNALKGLLTRNEKSISALDDVKIATAGHTALI 67

Query: 308 PLTSSMYVPGTIADIDNVVIDIGTGYYVQ 394
           PL+ S+Y+   ++D    +++IGTGY+V+
Sbjct: 68  PLSESLYIRAELSDPSKHLVEIGTGYFVE 96


>AF303258-1|AAG50216.1|  152|Caenorhabditis elegans 3H288 protein.
          Length = 152

 Score = 65.3 bits (152), Expect = 2e-11
 Identities = 31/89 (34%), Positives = 54/89 (60%)
 Frame = +2

Query: 128 VDLSKLSLPHLAQLKEQLDQELVLFQESLQTLQMAKNKFAESGESVDKITPEVKGNPILV 307
           V LS+LSL  L +L++  +QEL  FQES   L+    +  +S  ++D +     G+  L+
Sbjct: 8   VPLSELSLQQLGELQKNCEQELNFFQESFNALKGLLTRNEKSISALDDVKIATAGHTALI 67

Query: 308 PLTSSMYVPGTIADIDNVVIDIGTGYYVQ 394
           PL+ S+Y+   ++D    +++IGTGY+V+
Sbjct: 68  PLSESLYIRAELSDPSKHLVEIGTGYFVE 96


>U39848-7|AAA80693.3|  230|Caenorhabditis elegans Hypothetical
           protein B0286.1 protein.
          Length = 230

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +2

Query: 167 LKEQLDQELVLFQESLQTLQMAKNKFAESGESVDK 271
           ++  + Q+L+L +E +QTL+ AK K  E  E +DK
Sbjct: 170 IQHHIPQKLLLGRELVQTLEEAKVKKLEEREQMDK 204


>AF022968-6|AAB69884.1|  388|Caenorhabditis elegans Dehydrogenases,
           short chain protein16 protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -1

Query: 206 LEIELIP-GPTVPLIEPSVVNLAYLNQPAVQLKMMPFWKTITLKFDKIY 63
           L +E+ P G +V ++EP       LN  A ++++   W +++++  + Y
Sbjct: 202 LRLEMRPFGVSVHILEPGCFKTELLNNDAQRMRIQKIWNSLSVETKEEY 250


>Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical
           protein T06E4.1 protein.
          Length = 1295

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/38 (34%), Positives = 25/38 (65%)
 Frame = +2

Query: 158 LAQLKEQLDQELVLFQESLQTLQMAKNKFAESGESVDK 271
           L ++KE+ D++L   +E ++TLQM   K+ E   +++K
Sbjct: 350 LQEMKEEADEQLQKAKEDIETLQM---KYVELETTINK 384


>AF000264-2|AAC71121.1|  761|Caenorhabditis elegans Half transporter
           (pgp related)protein 2 protein.
          Length = 761

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +2

Query: 248 ESGESVDKITPEVKGNPILVPLTSSMYVP--GTIADIDNVVI-DIGTGYYVQK 397
           +SGE+V  + P   G   +V L    Y P  G++  +D V I DI   YY QK
Sbjct: 540 KSGETVALVGPSGGGKSSIVSLIEHFYEPDEGSVT-LDGVPIKDINHVYYHQK 591


>U42839-5|AAM54196.1|  133|Caenorhabditis elegans Hypothetical
           protein F11C7.6a protein.
          Length = 133

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 216 CRDS*NRTNSWSNCSFN*AKCGKLSLLKSTCCPV 115
           C  +    ++W  CS N   CGK +  + TC PV
Sbjct: 31  CDSTYGAWSAWGECSMNCGYCGKQNRTR-TCEPV 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,021,177
Number of Sequences: 27780
Number of extensions: 173668
Number of successful extensions: 548
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)