Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_J23
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    27   2.1  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    27   2.1  
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1...    26   4.8  
SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase Gpd1|Schizo...    26   4.8  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    25   6.3  
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi...    25   6.3  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    25   6.3  

>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -3

Query: 333 RLTVCCGQRSLHCSRAFIKSASQHITPNSQRSALTLNVNLLSHRIPSGP 187
           + TVC   + +         +S   +P+S  SA  L  N ++HR P  P
Sbjct: 498 KFTVCRPHKKVTLKMPLNSGSSAPQSPSSNTSASVLTRNFVAHRDPPPP 546


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 514 GTRQP*QH-PEHFSRQVGQSHTGTLG 588
           G RQP    P+ FS+ + +S TGT+G
Sbjct: 100 GARQPNPSIPQQFSKPINESGTGTMG 125


>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
           Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = +1

Query: 352 WVNYTQRAYNALRVQYNNAFRVLMGLPRYCSASGMF 459
           ++   Q  +N + V +    + +  L  YCS SG++
Sbjct: 139 FIGCKQVEFNTISVSFGGVSKAVSNLHAYCSQSGLY 174


>SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase
           Gpd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 385

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 372 PLRVVDPQTACVQRLTVCCGQRSLHCSRAFIKS 274
           P  +V+        +T C G R+  C+ AF+K+
Sbjct: 275 PRTMVEQSCGIADLVTSCLGGRNNRCAEAFVKT 307


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +3

Query: 144 FFTDGVIFYLCEYYLGHWVSD 206
           FF  G++FY+  ++L  W+ +
Sbjct: 123 FFFGGIVFYIFNHFLHKWLHE 143


>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
           Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 372 PLRVVDPQTACVQRLTVCCGQRSLHCSRAFIKS 274
           PL + +        +T C G R+  C+ AF+K+
Sbjct: 279 PLTMSEESCGIADLITTCLGGRNHKCAVAFVKT 311


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -3

Query: 279 KSASQHITPNSQRSALTLNVNLLSHRIPSGPDNIHTNRKS 160
           KS S + +P+S  + L     L S  +P+ PD + TNR S
Sbjct: 172 KSYSYNHSPSSLPTVLNSQA-LSSPPVPTTPDEVSTNRLS 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,434,205
Number of Sequences: 5004
Number of extensions: 46778
Number of successful extensions: 112
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)