Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_J23
(593 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0625 - 16325827-16326495 30 1.6
05_03_0600 + 16031952-16032614 30 1.6
02_03_0088 - 15085149-15085499,15085656-15085751 30 1.6
10_03_0035 - 7265037-7265455,7265684-7265812,7265909-7265951,726... 28 4.9
02_05_0021 - 25101738-25101881,25119662-25120331,25122562-251237... 28 4.9
02_01_0495 - 3586803-3586868,3587718-3588021,3591019-3591032 28 4.9
08_01_0722 + 6412654-6412860,6413142-6413687,6413745-6413877,641... 28 6.5
06_01_0017 + 189346-189561,189614-189905,190024-190043 27 8.5
03_02_0124 - 5749183-5749773,5750628-5751160,5751191-5753035,575... 27 8.5
02_05_0546 + 29889861-29890182,29891057-29892798 27 8.5
02_04_0312 - 21942310-21943356 27 8.5
>05_03_0625 - 16325827-16326495
Length = 222
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 472 FSPPRTSLKRCSTAATPSAP*MH 404
F PP + RCSTA +PS+P H
Sbjct: 19 FLPPPPAAPRCSTALSPSSPPFH 41
>05_03_0600 + 16031952-16032614
Length = 220
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 472 FSPPRTSLKRCSTAATPSAP*MH 404
F PP + RCSTA +PS+P H
Sbjct: 19 FLPPPPAAPRCSTALSPSSPLFH 41
>02_03_0088 - 15085149-15085499,15085656-15085751
Length = 148
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Frame = +1
Query: 271 RRFDKCSTAVKTTLSTAYCQSLYTCSLWVNYTQRAYNALRVQYNNAFRVLMGLPRYCSAS 450
RR D C + + T L+ S+Y W N+T + Q + ++ G C
Sbjct: 7 RRCDDCCSRLPTPLAKMLAWSVYGLPKW-NFTNHINQRAKSQ-KLPYNMISGAGATCRGR 64
Query: 451 GMFAEARINGFHAIMRL-SHEQG 516
G+ EA + + RL + E+G
Sbjct: 65 GLDDEAEVEARDVVERLDAAEEG 87
>10_03_0035 -
7265037-7265455,7265684-7265812,7265909-7265951,
7266321-7266344
Length = 204
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +2
Query: 347 VCGSTTRRGHTTLCVYNTTMHSGC*WGCRGTAALQGC 457
+CG+ G LC+ H G +GCR A C
Sbjct: 141 ICGAGVAPGRACLCLGQCRCHCGGGYGCRCCGAAPPC 177
>02_05_0021 -
25101738-25101881,25119662-25120331,25122562-25123779,
25123859-25124109
Length = 760
Score = 28.3 bits (60), Expect = 4.9
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = -3
Query: 483 KAINSRLREHP*SAAVPRQPHQHPECIVVLYTQSVVCPLRVVDPQTACV-QRLTVCCGQR 307
+A +SRL +HP S A + Q E I L QS + P + A + Q T+ G+R
Sbjct: 424 EASSSRLNDHPTSNAFIAKKGQLDENIDALEWQSSIPPYYKYRTRYAMIEQPNTLSTGKR 483
Query: 306 SLHCSRAFIKSAS 268
S S +++ +
Sbjct: 484 SRSLSEGYVEQTN 496
>02_01_0495 - 3586803-3586868,3587718-3588021,3591019-3591032
Length = 127
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +3
Query: 315 HSILSVVVHMQSVGQLHAEGIQRSACTIQQCIQGADGVAAVLQRFRDVR 461
H+ + VVH + +GQ H E R QQ + +D + A L ++D R
Sbjct: 18 HAAVGAVVH-EVMGQWHGEAAGRGEEQQQQQQRQSDQLIAALHAYKDFR 65
>08_01_0722 +
6412654-6412860,6413142-6413687,6413745-6413877,
6413917-6414035,6414128-6414883,6415209-6415258,
6415560-6416679
Length = 976
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Frame = +2
Query: 275 DLINARLQ*RLRCPQHTV----SRCTHAVCGSTTRRGHTTLCVYNTTMHSG 415
DL+ RL + PQ TV S T VCG+T G+ L Y M+ G
Sbjct: 138 DLLMKRLDDHEKWPQGTVKALDSHVTCEVCGNTGDSGNDCLETYEGAMYMG 188
>06_01_0017 + 189346-189561,189614-189905,190024-190043
Length = 175
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -3
Query: 489 GMKAINSRLREHP*SAAVPRQPHQHPE 409
G KA+ +R++E AA PR PH HP+
Sbjct: 39 GKKAV-ARVKELLRRAAQPRSPHPHPQ 64
>03_02_0124 -
5749183-5749773,5750628-5751160,5751191-5753035,
5753632-5753820,5753911-5754013,5754087-5754269,
5754392-5754484,5755031-5755219,5756133-5756327
Length = 1306
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 252 NSQRSALTLNVNLLSHRIPSGPDNIHTNRKSH 157
NSQRSA+ L N + I + DN+ N S+
Sbjct: 388 NSQRSAMALKKNAENPNIRANQDNLSENANSY 419
>02_05_0546 + 29889861-29890182,29891057-29892798
Length = 687
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -1
Query: 593 GVPNVPVWDCPTCLLKCSG 537
GVP W CPTCL K G
Sbjct: 244 GVPKAE-WHCPTCLTKSKG 261
>02_04_0312 - 21942310-21943356
Length = 348
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -3
Query: 438 VPRQPHQ-HPECIVVLYTQSVVCPL 367
+P PH HPECI + + V CPL
Sbjct: 145 LPACPHAFHPECIGLWLEKHVTCPL 169
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,633,797
Number of Sequences: 37544
Number of extensions: 335708
Number of successful extensions: 879
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -