Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_J23
         (593 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U63630-2|AAC52019.2| 1689|Homo sapiens DNA-PKcs protein.               30   7.1  
U47077-1|AAB39925.5| 4128|Homo sapiens DNA-dependent protein kin...    30   7.1  
U34994-1|AAC50210.3| 4097|Homo sapiens DNA dependent protein kin...    30   7.1  
AY316117-1|AAP69525.1| 4128|Homo sapiens protein kinase, DNA-act...    30   7.1  

>U63630-2|AAC52019.2| 1689|Homo sapiens DNA-PKcs protein.
          Length = 1689

 Score = 29.9 bits (64), Expect = 7.1
 Identities = 12/40 (30%), Positives = 26/40 (65%)
 Frame = +3

Query: 327  SVVVHMQSVGQLHAEGIQRSACTIQQCIQGADGVAAVLQR 446
            ++V++M+S+   HA+  ++S  TIQQC    D +  ++++
Sbjct: 1103 ALVIYMESLALAHAD--EKSLGTIQQCCDAIDHLCRIIEK 1140


>U47077-1|AAB39925.5| 4128|Homo sapiens DNA-dependent protein kinase
            catalytic subunit protein.
          Length = 4128

 Score = 29.9 bits (64), Expect = 7.1
 Identities = 12/40 (30%), Positives = 26/40 (65%)
 Frame = +3

Query: 327  SVVVHMQSVGQLHAEGIQRSACTIQQCIQGADGVAAVLQR 446
            ++V++M+S+   HA+  ++S  TIQQC    D +  ++++
Sbjct: 1103 ALVIYMESLALAHAD--EKSLGTIQQCCDAIDHLCRIIEK 1140


>U34994-1|AAC50210.3| 4097|Homo sapiens DNA dependent protein kinase
            catalytic subunit protein.
          Length = 4097

 Score = 29.9 bits (64), Expect = 7.1
 Identities = 12/40 (30%), Positives = 26/40 (65%)
 Frame = +3

Query: 327  SVVVHMQSVGQLHAEGIQRSACTIQQCIQGADGVAAVLQR 446
            ++V++M+S+   HA+  ++S  TIQQC    D +  ++++
Sbjct: 1103 ALVIYMESLALAHAD--EKSLGTIQQCCDAIDHLCRIIEK 1140


>AY316117-1|AAP69525.1| 4128|Homo sapiens protein kinase,
            DNA-activated, catalytic polypeptide protein.
          Length = 4128

 Score = 29.9 bits (64), Expect = 7.1
 Identities = 12/40 (30%), Positives = 26/40 (65%)
 Frame = +3

Query: 327  SVVVHMQSVGQLHAEGIQRSACTIQQCIQGADGVAAVLQR 446
            ++V++M+S+   HA+  ++S  TIQQC    D +  ++++
Sbjct: 1103 ALVIYMESLALAHAD--EKSLGTIQQCCDAIDHLCRIIEK 1140


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,372,584
Number of Sequences: 237096
Number of extensions: 1818190
Number of successful extensions: 3750
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3750
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6268037466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)