Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_J22
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    26   3.6  
SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr 2...    26   4.8  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   8.4  

>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
            Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -1

Query: 330  YIFPSLLLQYISEVNFVKSFKINVSFKI-NYNDSYFTNKI*ILSNIVYF 187
            Y   ++L+Q  S+  F KS    +  K+ N  +S+ T+ I +LSN+ YF
Sbjct: 1017 YELKNILVQGYSQEEFRKSPPRGMQLKLGNLTNSHVTDTI-VLSNLGYF 1064


>SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 228

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 118 NIINDTYIEVQSRFAHSKAFFYFLLLILKCLVFNLLPR 5
           +I+ND+Y       AH     Y  LLI  C   N +P+
Sbjct: 161 SIVNDSYASSLCLMAHPHQLAYAALLISCCNDENTIPK 198


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +3

Query: 66  LECANLLCTSMYVSFIIFLCY*FNDFCLNNILFNFRYIIMKNILYYLEF 212
           L C N  C S+    I F    F++    N + +F  +++ N++  L F
Sbjct: 586 LRCKNAYCDSIQRKGIKFPANYFDNVYTPNSISSFSEVLLPNLISTLNF 634


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,788,940
Number of Sequences: 5004
Number of extensions: 26471
Number of successful extensions: 63
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)