Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_J21
         (613 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.1  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   3.1  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   7.2  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   7.2  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 564 FYDPLFLKLYFSWR 523
           FY P+ + L+F WR
Sbjct: 256 FYIPMLVMLFFYWR 269


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = +3

Query: 99  NMFIIIKTPLYIY 137
           + F++IKTP++IY
Sbjct: 94  DFFMMIKTPIFIY 106


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 6   RHHIMNYICYVSIYILL*SM 65
           RH+ MN   YV++ I+L +M
Sbjct: 241 RHYSMNSTTYVTLTIVLMTM 260


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +2

Query: 149 LIFKCHVNFYIKT*ILTINHYK 214
           LIF   ++FY+   ++   +YK
Sbjct: 207 LIFSSTISFYLPLFVMVFTYYK 228


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,516
Number of Sequences: 438
Number of extensions: 3310
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)