Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_J19
(545 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 29 0.59
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M... 27 1.8
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 27 2.4
SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|c... 27 2.4
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 26 4.2
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 25 5.5
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 25 5.5
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 25 5.5
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 25 7.3
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 25 9.6
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S... 25 9.6
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 28.7 bits (61), Expect = 0.59
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 45 RLQHAPPSQTTKQHTNNMSSSLTRKSSRRQQQLAT 149
R H+P T +TN+ ++LTR SS Q +T
Sbjct: 85 RTSHSPYISPTMSYTNHSPANLTRNSSFNHQHYST 119
>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 535
Score = 27.1 bits (57), Expect = 1.8
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = +3
Query: 39 RKRLQHAPPSQTTKQHTN--NMSSSLTRKSSRRQQQLAT 149
R+R + APP++ K HT+ N +SSL SS + Q++T
Sbjct: 479 RRRYRVAPPAENEKPHTSRTNTASSL---SSTSEDQVST 514
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 39 RKRLQHAPPSQTTKQHTNNMSSSLTRKSSRRQQQ 140
RK + AP +T+Q T + S S T+KSSR +++
Sbjct: 1215 RKYNRKAPTKSSTRQTTLDGSISNTKKSSRTKKK 1248
>SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 26.6 bits (56), Expect = 2.4
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 133 WRRDDLRVSDDDILFVCCFV-VCEGGACWRRLRV 35
WR + +++ F CC V +CE A W RL++
Sbjct: 116 WRNIIIGPLSEELTFRCCIVPICE-AAGWSRLKI 148
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 42 KRLQHAPPSQTTKQHTNNMSSSLTRKSSRRQQQL 143
K +H P S+ T+ + SSS T++S+ R+ ++
Sbjct: 428 KTFEHQPLSKDTEAPKSQFSSSPTKESTTRKSEV 461
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 48 LQHAPPSQTTKQHTNNMSSSLTRKSS 125
LQH TT T+N SSS TR ++
Sbjct: 229 LQHIEAPATTSSPTSNTSSSKTRNNT 254
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 25.4 bits (53), Expect = 5.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 280 RNVLLINKIYYNAIVDRERC 339
R VL NKIY ++VD ++C
Sbjct: 338 REVLDANKIYSESVVDLDKC 357
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 25.4 bits (53), Expect = 5.5
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +3
Query: 6 RAAAAVPTGGTRKRLQHAPPSQTTKQHTNNMSSSLTRKS 122
R + P G T + H+PPS ++ + +++ T++S
Sbjct: 144 RQSPRTPIGSTTPKSSHSPPSTRKRRGSVGTTATHTKRS 182
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 25.0 bits (52), Expect = 7.3
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = +3
Query: 345 KQRAYSLRSATAESQACGSRYTSSNMELVEL-----DRERTLTE 461
KQ+ L AES+A + SSN + +L D+E+TL +
Sbjct: 590 KQKGEVLEQVVAESEAAKNMVESSNASIQQLKSEVADKEQTLAQ 633
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 24.6 bits (51), Expect = 9.6
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +3
Query: 51 QHAPPSQTTKQHTNNMSSSLTRKSSRRQQ 137
++ PPS ++ HT+N + RQQ
Sbjct: 743 ENTPPSGCSRNHTSNSYKIIATNEMNRQQ 771
>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 24.6 bits (51), Expect = 9.6
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 54 HAPPSQTTKQHTNNMSSSLTRKSSRRQQQLAT*KT 158
H+P T N SS R SSRR+Q ++ T
Sbjct: 583 HSPSPSATSSIKKNPSSIFRRFSSRRKQNKSSTST 617
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,870,018
Number of Sequences: 5004
Number of extensions: 32804
Number of successful extensions: 93
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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