Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_J19
         (545 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0452 + 23044190-23045227                                         30   1.0  
12_01_0285 + 2120130-2121204,2122842-2123116                           29   2.4  
08_01_0175 - 1497700-1498459,1498546-1499939                           29   2.4  
11_01_0277 + 2060328-2061061,2061360-2061420,2061560-2061679,206...    29   3.2  
10_08_1020 - 22309900-22310361,22310455-22310697,22311164-22311223     28   4.2  
07_03_0638 + 20196216-20196650,20196810-20196930,20197072-201971...    28   4.2  
11_01_0281 + 2086674-2087652,2089200-2089483                           28   5.6  
01_01_1233 + 10003713-10004369,10004772-10004851,10004928-100050...    27   7.4  

>02_04_0452 + 23044190-23045227
          Length = 345

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 64  GGACWRRLRVPPVGTAAAA 8
           GG CW  + +PP G AAAA
Sbjct: 127 GGGCWPWVNIPPQGAAAAA 145


>12_01_0285 + 2120130-2121204,2122842-2123116
          Length = 449

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 24  PTGGTRKRLQHAPPSQTTKQHTNNMSSSL-TRKSSRRQQQLA 146
           P GG  K +  APP+  +K+     S+S+ TR +SR+ ++ A
Sbjct: 83  PLGGAMKHMALAPPAPPSKKSKKKNSNSVWTRPNSRKGKKKA 124


>08_01_0175 - 1497700-1498459,1498546-1499939
          Length = 717

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 21  VPTGGTRKRLQHAPPSQTTKQHTNNMSSSLTRKS 122
           +P+GGT  R+ ++PP Q  +  T  ++S  TR S
Sbjct: 61  LPSGGTMGRVAYSPPVQLWEAATGEVASFTTRFS 94


>11_01_0277 +
           2060328-2061061,2061360-2061420,2061560-2061679,
           2061947-2062112,2062229-2062635
          Length = 495

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 18  AVPTGGTRKRLQHAPPSQTTKQHTNNMSSSL-TRKSSRRQQQLA 146
           A P GG  K +  APP   +K+     S+S+ TR +SR+ ++ A
Sbjct: 82  ANPLGGAMKHMALAPPPPPSKKSKKKNSNSVWTRPNSRKGKKKA 125


>10_08_1020 - 22309900-22310361,22310455-22310697,22311164-22311223
          Length = 254

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 3   TRAAAAVPTGGTRKRLQHAPPSQTTKQHTNNMS 101
           T AA A  T   RKRL+HA    +T    N+ S
Sbjct: 184 TAAATATATAARRKRLRHAHAMASTSDSDNSTS 216


>07_03_0638 +
           20196216-20196650,20196810-20196930,20197072-20197168,
           20197284-20197323,20197648-20197731,20198966-20199130
          Length = 313

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 100 DILFVCCFVVCEGGACWRRLRVPPVGTAAAALV 2
           D L  C      GG  +RRL  PP G AA A++
Sbjct: 70  DQLLACSSCAGGGGGRYRRLGPPPQGVAAGAVL 102


>11_01_0281 + 2086674-2087652,2089200-2089483
          Length = 420

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 24  PTGGTRKRLQHAPPSQTTKQHTNNMSSSL-TRKSSRRQQQLA 146
           P GG  K +  APP    K+     S+S+ TR +SR+ ++ A
Sbjct: 86  PLGGAMKHMALAPPPPPNKKSKKKNSNSVWTRPNSRKGKKKA 127


>01_01_1233 +
           10003713-10004369,10004772-10004851,10004928-10005011,
           10005012-10005190,10005347-10005391,10006148-10006335
          Length = 410

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 76  VVCEGGACWRRLRVPPVGTAA 14
           VV E G  W R+R PPV T A
Sbjct: 283 VVLEDGVHWDRVRAPPVDTHA 303


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,344,114
Number of Sequences: 37544
Number of extensions: 220552
Number of successful extensions: 619
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)