Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_J19
         (545 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC000346-1|AAH00346.1|  330|Homo sapiens dual specificity phosph...    32   1.1  
AF023917-1|AAC39925.1|  330|Homo sapiens PIR1 protein.                 30   6.1  
DQ926357-1|ABK81573.1|  129|Homo sapiens immunoglobulin heavy ch...    29   8.0  
AF182077-1|AAF62874.1| 1509|Homo sapiens glioma tumor suppressor...    29   8.0  

>BC000346-1|AAH00346.1|  330|Homo sapiens dual specificity
           phosphatase 11 (RNA/RNP complex 1-interacting) protein.
          Length = 330

 Score = 32.3 bits (70), Expect = 1.1
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 138 VVGVETIYGLVTTTYYLCVVLLFVRAVRAGDAYE 37
           ++GV   +GL  T Y +C+ L+ V  VR  DA E
Sbjct: 147 LIGVHCTHGLNRTGYLICIYLIDVEGVRPDDAIE 180


>AF023917-1|AAC39925.1|  330|Homo sapiens PIR1 protein.
          Length = 330

 Score = 29.9 bits (64), Expect = 6.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 138 VVGVETIYGLVTTTYYLCVVLLFVRAVRAGDAYE 37
           ++GV   +GL  T Y +C  L+ V  VR  DA E
Sbjct: 147 LIGVHCTHGLNRTGYLICRYLIDVEGVRPDDAIE 180


>DQ926357-1|ABK81573.1|  129|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 129

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 109 SDDDILFVCCFVVCEGGACWR 47
           SDD  ++ C  + C GG C+R
Sbjct: 88  SDDTAVYYCARIACNGGTCYR 108


>AF182077-1|AAF62874.1| 1509|Homo sapiens glioma tumor suppressor
            candidate region protein 1 protein.
          Length = 1509

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 17/60 (28%), Positives = 32/60 (53%)
 Frame = -2

Query: 343  YRTALYRLLHYNIFY*LIKHYEYYYKVTDKFQVLHSDTALFTSKVNELMKHQLIFIN*SR 164
            +  AL+RLL Y+++   +     Y+KV ++F+ +   T L       L K++L+ +  SR
Sbjct: 1056 FEDALHRLLPYHVYQGALPSPSDYHKVDEEFETV--STQLLKRTQAMLNKYRLLLLEESR 1113


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,643,158
Number of Sequences: 237096
Number of extensions: 1170564
Number of successful extensions: 2460
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2460
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5364536570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)