Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_J18
(605 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 2.1
SPAC6G10.03c |||abhydrolase family protein, unknown biological r... 27 2.1
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch... 26 3.7
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 26 4.9
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S... 26 4.9
SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces p... 25 6.5
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces... 25 6.5
SPAC1002.18 |urg3||DUF1688 family protein|Schizosaccharomyces po... 25 8.6
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 8.6
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 8.6
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 478 IEHTSDVYNRVSADDGFINVRVLSGQVR 395
+ H + +YN V A++ + RV SGQV+
Sbjct: 488 VMHVTKLYNTVDANNFYAFARVYSGQVK 515
>SPAC6G10.03c |||abhydrolase family protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 428
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +2
Query: 323 ALQKFKVDAG--RLCLFGGSHGGFLVTHLSGQYPDVYKAVVSRNPVIDVASMFNSTD 487
+L+ +++ G ++ L G S GG+L + QYP+ + ++ +PV + F S D
Sbjct: 161 SLETWRIGHGIEKMILVGHSMGGYLSAVYAMQYPERVEKLLLVSPVAIPENPFASND 217
>SPCC4F11.04c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -1
Query: 134 EATRSAAVSYQFHPIWVRNTKPRTTL*LSFDILTSVDKGPF 12
+ R S ++P+WVR T P + +S D++ SV P+
Sbjct: 168 DGCRQRLDSLLYYPVWVRRTDP---VGVSNDVMGSVPHHPY 205
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.8 bits (54), Expect = 4.9
Identities = 24/72 (33%), Positives = 32/72 (44%)
Frame = -3
Query: 495 SGMSVELNILATSITGFRLTTAL*TSGYCPDRCVTRKPPCDPPNKHSLPASTLNFCKATS 316
S SV L S+T TT L +S VT P + SL + + ++TS
Sbjct: 298 SDSSVITYTLINSVTSSSETTNLPSSS---SSLVTIGESSFPSSLLSLLTQSFSTVRSTS 354
Query: 315 VASLQSLTSASP 280
+S LTSASP
Sbjct: 355 SSSTDQLTSASP 366
>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 272
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 245 GDASVRFLPKRVGDADVKDCKLATDVALQKFK 340
G+ V+ KR+ DVKD KL D+ K K
Sbjct: 101 GNEEVKAKEKRIKSPDVKDFKLPKDILKVKEK 132
>SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 232
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = -1
Query: 269 VENVPKRHQRPSNRDNL 219
VE++PK++++ S RDNL
Sbjct: 22 VEDIPKKYRKQSFRDNL 38
>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 312
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = -3
Query: 549 SDSAPASQYWKPASAAHQSGMSVELNILATSITGFRLTTAL*T-SGYCPDRCVTRKPPCD 373
+D + +W Q+G + + +I + IT + L T SG P + + P
Sbjct: 159 NDDFVGTPFWMAPEVVKQTGYNYKADIWSLGITAYELATGEPPYSGIHPMKVLLLIPKHS 218
Query: 372 PPN 364
PP+
Sbjct: 219 PPS 221
>SPAC1002.18 |urg3||DUF1688 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 399
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 190 QHVRYGIAPNKLSRFDGRW*RFGTFSTETCRR 285
QH G P +LS+ +W + G S E C+R
Sbjct: 70 QHFEVGNVP-RLSQLVSKWEKEGVDSLEICKR 100
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.0 bits (52), Expect = 8.6
Identities = 22/104 (21%), Positives = 41/104 (39%)
Frame = -3
Query: 588 ANGEHLRMANNCSSDSAPASQYWKPASAAHQSGMSVELNILATSITGFRLTTAL*TSGYC 409
A+ L ++ SS +S ++ + S ++ ++S T L ++ TS
Sbjct: 70 ASSSSLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSL 129
Query: 408 PDRCVTRKPPCDPPNKHSLPASTLNFCKATSVASLQSLTSASPT 277
+T S AS+ + + +S S TSA+PT
Sbjct: 130 ASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATPT 173
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.0 bits (52), Expect = 8.6
Identities = 19/79 (24%), Positives = 32/79 (40%)
Frame = -3
Query: 516 PASAAHQSGMSVELNILATSITGFRLTTAL*TSGYCPDRCVTRKPPCDPPNKHSLPASTL 337
P A S + L ++ T +T++ +G T P PP S P +T
Sbjct: 370 PPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTG----NSTTPVTPTVPPTSSSTPLTTT 425
Query: 336 NFCKATSVASLQSLTSASP 280
N +TSV + +++P
Sbjct: 426 NCTTSTSVPYTSTPVTSTP 444
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,657,722
Number of Sequences: 5004
Number of extensions: 56171
Number of successful extensions: 145
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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