Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_J17
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc...   176   2e-45
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom...   176   2e-45
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    27   2.0  
SPBC23E6.03c |nta1||protein N-terminal amidase Nta1 |Schizosacch...    26   4.7  
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...    25   6.2  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    25   8.3  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           25   8.3  

>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
           L20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score =  176 bits (429), Expect = 2e-45
 Identities = 94/177 (53%), Positives = 118/177 (66%), Gaps = 5/177 (2%)
 Frame = +2

Query: 32  LKEYEVIGRKLPSESEPSSSI-QMRIEEIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVS 208
           LKEY+V+GRK+P+E EP   + +MR+   F+P+  VAKSR+WYFL+ + K KK TGEIV+
Sbjct: 3   LKEYQVVGRKVPTEHEPVPKLFRMRL---FAPNESVAKSRYWYFLKMINKVKKATGEIVA 59

Query: 209 IKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHS 388
           I EI E  P+K K FGIW+RY+SRSG HNMY+E+RD +  GAV   Y DM ARHRAR  S
Sbjct: 60  INEISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRS 119

Query: 389 IQIIK-VEVIKAAACRRPQVKQFHTSKIGFPLPKR---VHQYKRLNTFAYKRPSTYF 547
           I+I+K VEV K    RR  VKQ     + FPLP R   V        FA  RPST++
Sbjct: 120 IRILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVGLAGKKVFAPHRPSTFY 176


>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
           protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score =  176 bits (429), Expect = 2e-45
 Identities = 94/177 (53%), Positives = 118/177 (66%), Gaps = 5/177 (2%)
 Frame = +2

Query: 32  LKEYEVIGRKLPSESEPSSSI-QMRIEEIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVS 208
           LKEY+V+GRK+P+E EP   + +MR+   F+P+  VAKSR+WYFL+ + K KK TGEIV+
Sbjct: 3   LKEYQVVGRKVPTEHEPVPKLFRMRL---FAPNESVAKSRYWYFLKMINKVKKATGEIVA 59

Query: 209 IKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHS 388
           I EI E  P+K K FGIW+RY+SRSG HNMY+E+RD +  GAV   Y DM ARHRAR  S
Sbjct: 60  INEISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRS 119

Query: 389 IQIIK-VEVIKAAACRRPQVKQFHTSKIGFPLPKR---VHQYKRLNTFAYKRPSTYF 547
           I+I+K VEV K    RR  VKQ     + FPLP R   V        FA  RPST++
Sbjct: 120 IRILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVGLAGKKVFAPHRPSTFY 176


>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 104 IEEIFSPDPIVAKSRFWYFLRQLKKFK 184
           ++E  + D ++   RFWY+L + K F+
Sbjct: 469 VQEKRNKDRLIVTFRFWYYLMKAKSFQ 495


>SPBC23E6.03c |nta1||protein N-terminal amidase Nta1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -1

Query: 147 RDFATIGSGEKISSILICIEELGSLSEGSLRPMTSYSFNSPF 22
           + +AT G G        CI ELG +S      +  Y F +PF
Sbjct: 129 KSWATEGKGFSFEP---CIPELGPISMAICMDINPYDFKAPF 167


>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -3

Query: 298 HIVDTRARLVTQPDTKVLNLNRTLFWNFLDGYNFTSSLF 182
           H+V+  +          LNL    F NF+DG   TS+ F
Sbjct: 282 HVVEEVSEEYNDKTVVYLNLLCDSFHNFMDGLAITSAFF 320


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 450 NSTPARSVSRYQNAFTNTSVSIPLHTRGRAR 542
           NS+P +S+S+Y NA  N   SI   T    +
Sbjct: 148 NSSPFKSLSQYWNAAYNKKESISSSTNSNIK 178


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +2

Query: 101 RIEEIFSPDPIVAKSRFWYFLRQLKKFKK 187
           +I+++    P++ ++ FW   + L+K KK
Sbjct: 89  KIKDLIFKTPVIPETNFWSACKNLEKDKK 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,470,118
Number of Sequences: 5004
Number of extensions: 51117
Number of successful extensions: 175
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)