Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_J17
(591 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0730 - 31552747-31553088,31553583-31553646,31553743-315538... 167 8e-42
05_07_0131 + 27898028-27898042,27898159-27898274,27898361-278984... 165 2e-41
01_06_0180 - 27260099-27260440,27261236-27261350,27261403-272615... 142 1e-34
04_04_1397 - 33230416-33230742,33230852-33231007,33231130-332315... 33 0.17
09_02_0235 + 6122145-6122206,6122408-6122417,6123515-6123549,612... 31 0.52
08_02_0456 - 17362080-17364156,17364853-17364942,17372615-173733... 31 0.69
08_01_0600 - 5262573-5262773,5262850-5262952,5263050-5263180,526... 28 4.8
11_06_0007 - 19171122-19172036 28 6.4
04_04_1206 + 31727931-31728048,31728492-31728538,31728782-317289... 28 6.4
04_01_0122 + 1267048-1267149,1267764-1267855,1268137-1268234,126... 28 6.4
01_06_0801 - 32085110-32085274,32086318-32086365,32086441-320864... 28 6.4
>01_06_0730 -
31552747-31553088,31553583-31553646,31553743-31553858,
31553964-31553978
Length = 178
Score = 167 bits (405), Expect = 8e-42
Identities = 81/172 (47%), Positives = 112/172 (65%), Gaps = 3/172 (1%)
Frame = +2
Query: 38 EYEVIGRKLPSESEPSSSIQMRIEEIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKE 217
+Y+V+GR LP+ ++ I ++++ + + AKS+FWYFLR+LKK KK+ G+I++I E
Sbjct: 8 QYQVVGRGLPTPTDEHPKIYRM--KLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINE 65
Query: 218 IPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQI 397
I EK+P IKN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R IQI
Sbjct: 66 IFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQI 125
Query: 398 IKVEVIKAAACRRPQVKQFHTSKIGFPL---PKRVHQYKRLNTFAYKRPSTY 544
IK + C+R KQFH S I FPL R K TF RP+ +
Sbjct: 126 IKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNLF 177
>05_07_0131 +
27898028-27898042,27898159-27898274,27898361-27898424,
27899450-27899791
Length = 178
Score = 165 bits (401), Expect = 2e-41
Identities = 79/172 (45%), Positives = 111/172 (64%), Gaps = 3/172 (1%)
Frame = +2
Query: 38 EYEVIGRKLPSESEPSSSIQMRIEEIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKE 217
+Y+V+GR LP+ + I ++++ + + AKS+FWYFLR+LKK KK+ G++++I E
Sbjct: 8 QYQVVGRALPTPGDEHPKIYRM--KLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINE 65
Query: 218 IPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQI 397
I E++P IKN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R IQI
Sbjct: 66 IFERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQI 125
Query: 398 IKVEVIKAAACRRPQVKQFHTSKIGFPL---PKRVHQYKRLNTFAYKRPSTY 544
IK + C+R KQFH S I FPL R K TF RP+ +
Sbjct: 126 IKTATVHFKLCKRDNTKQFHNSNIKFPLVYRKVRPPTRKLKTTFKASRPNLF 177
>01_06_0180 -
27260099-27260440,27261236-27261350,27261403-27261518,
27261594-27261608
Length = 195
Score = 142 bits (345), Expect = 1e-34
Identities = 78/189 (41%), Positives = 110/189 (58%), Gaps = 20/189 (10%)
Frame = +2
Query: 38 EYEVIGRKLPSESEPSSSIQMRIEEIFSPDPIVAKSRF----------W-------YFLR 166
+Y+V+GR LP+ + I ++++ + + AKS+F W YFLR
Sbjct: 8 QYQVVGRALPTPGDEHPKIYRM--KLWATNEVRAKSKFCSSYLVRFADWGACPVCRYFLR 65
Query: 167 QLKKFKKTTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQC 346
+LKK KK+ G++++I EI E++P IKN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q
Sbjct: 66 KLKKVKKSNGQMLAINEIFERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQM 125
Query: 347 YRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPL---PKRVHQYKRLNT 517
Y +M +RHR R IQIIK + C+R KQFH I FPL R K T
Sbjct: 126 YTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHNGSIKFPLVYRKVRPPTRKLKTT 185
Query: 518 FAYKRPSTY 544
F RP+ +
Sbjct: 186 FKASRPNLF 194
>04_04_1397 -
33230416-33230742,33230852-33231007,33231130-33231543,
33234177-33234307,33235076-33235202,33235709-33236209,
33237624-33237935,33238690-33238719
Length = 665
Score = 33.1 bits (72), Expect = 0.17
Identities = 23/90 (25%), Positives = 42/90 (46%)
Frame = +2
Query: 14 MKAKGELKEYEVIGRKLPSESEPSSSIQMRIEEIFSPDPIVAKSRFWYFLRQLKKFKKTT 193
M A+G K GR +E E + +EEI + + I + ++ +K +
Sbjct: 1 MAARGSKKRKIAEGRTHWTEEELRVFLHSCLEEIQARNIISSSPEAQGYINLERKMLERA 60
Query: 194 GEIVSIKEIPEKSPVKIKNFGIWLRYESRS 283
G+ V+ K++ + KNFG+W ES++
Sbjct: 61 GKRVTKKQVKWRWAKSRKNFGMWTWLESKA 90
>09_02_0235 +
6122145-6122206,6122408-6122417,6123515-6123549,
6124422-6124842,6124978-6125412
Length = 320
Score = 31.5 bits (68), Expect = 0.52
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = -3
Query: 319 QVTVFTVHIVDTRARLVTQPDTKVLNLNRTLFWNFLDGYNFTSSLFELLQLPQEIPE 149
+++ F V I +L+ P+T VLNL + +F+ T+ L E L +P+ I E
Sbjct: 185 EISDFDVLIGHPIEKLIDVPETGVLNLKIEIIISFVPVLQSTNCLMEPLPIPEPIKE 241
>08_02_0456 - 17362080-17364156,17364853-17364942,17372615-17373318,
17373421-17373451,17374366-17374448,17374517-17374640,
17376427-17376560
Length = 1080
Score = 31.1 bits (67), Expect = 0.69
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = -1
Query: 165 LKKYQKRDFATIGSGEKISSILICIEELGSLSEGSLRPMTSYSFNS 28
LK+ + D +T+G + S+++ +EE+ + G LR +SY F S
Sbjct: 930 LKELSQEDVSTLGGLPALLSLILYVEEVITEEGGRLRISSSYGFPS 975
>08_01_0600 -
5262573-5262773,5262850-5262952,5263050-5263180,
5263263-5263312,5265266-5265725,5266349-5266708
Length = 434
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/69 (23%), Positives = 33/69 (47%)
Frame = +2
Query: 146 RFWYFLRQLKKFKKTTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSV 325
++W + TGE+ S+K I +K +++ +G ++ + S +G + + Y +
Sbjct: 103 QYWMDENYISACFAPTGELQSVKLIRDKQTGQLQGYG-FIEFTSHAGAERVLQTYNGAMM 161
Query: 326 GGAVTQCYR 352
V Q YR
Sbjct: 162 PN-VEQTYR 169
>11_06_0007 - 19171122-19172036
Length = 304
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Frame = -1
Query: 456 WNCLTCGRRHAAALITST--LMICIECARALCLAPISL 349
W C CG R AA L+ L +C C P+ L
Sbjct: 252 WGCKACGEREAAVLLLPCRHLCLCRACEARAEACPVCL 289
>04_04_1206 +
31727931-31728048,31728492-31728538,31728782-31728906,
31729067-31729133,31729221-31729283,31729429-31729498,
31729751-31729770,31729840-31729956,31730046-31730227,
31730586-31730640,31731604-31731697,31731791-31731900,
31733167-31733193,31733510-31733701
Length = 428
Score = 27.9 bits (59), Expect = 6.4
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Frame = +2
Query: 11 KMKAKGELKEYEVIGRKLPSESE---PSSSIQMRIE-------EIFSPDPIVAKSRFWYF 160
KM AKGE EY + R + S +Q+R E + + V K+
Sbjct: 330 KMAAKGEAVEYRCLVRATDGKKNICTAGSIVQLRAELSAKEYLKFQASYATVLKAHMHAL 389
Query: 161 LRQLKKFKKTTGEIVSIKEIPEKSPVKIK 247
++ +K KK E+ ++IPEK+P K K
Sbjct: 390 KKRERKDKKKAAEV---EKIPEKAPKKQK 415
>04_01_0122 +
1267048-1267149,1267764-1267855,1268137-1268234,
1268333-1268488,1268736-1269355,1269480-1269547,
1269848-1270099,1270390-1270525,1271054-1271246,
1271386-1271939
Length = 756
Score = 27.9 bits (59), Expect = 6.4
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = -1
Query: 213 LMDTISPVVFLNFFNCLKKYQKRDFATIGSGEKISSIL--ICIEELGSLSEGSLRPMTS 43
L+ I+P+ +L FFNC+ +D T G I L I I L + SE ++R +T+
Sbjct: 613 LIYDINPLDYLKFFNCMGGLGSQDNCTTTKGSVIDLNLPSIAIPNLRT-SETAVRTVTN 670
>01_06_0801 -
32085110-32085274,32086318-32086365,32086441-32086483,
32086588-32086651,32086740-32086792,32086899-32086937,
32087031-32087113,32087200-32087280
Length = 191
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -1
Query: 498 W*TRFGSGKPILLVWNCLTCGRRHAAALITSTLMICIECARAL 370
W R+G KPI+ C CG+R+ + +C C++ L
Sbjct: 52 WKRRYGKYKPIVEPAKCQKCGKRNVRQAYHN---VCTACSKDL 91
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,744,305
Number of Sequences: 37544
Number of extensions: 325517
Number of successful extensions: 882
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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