Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_J17
         (591 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    26   0.32 
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    26   0.32 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.56 
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    21   9.0  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   9.0  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   9.0  

>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 11/46 (23%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -3

Query: 259 DTKVLNLNRTLFWNFLDGYNFTSSLFELL---QLPQEIPETRFCHN 131
           +TK+++ N   + N+ + YN     + ++   Q+P  +P   +C N
Sbjct: 300 ETKIISSNNYNYKNYNNNYNSKKLYYNIINIEQIPVPVPVPIYCGN 345


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 11/46 (23%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -3

Query: 259 DTKVLNLNRTLFWNFLDGYNFTSSLFELL---QLPQEIPETRFCHN 131
           +TK+++ N   + N+ + YN     + ++   Q+P  +P   +C N
Sbjct: 311 ETKIISSNNYNYKNYNNNYNSKKLYYNIINIEQIPVPVPVPIYCGN 356


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 328 TYTQVTVFTVHIVDTRARLVTQPDTKVLNLNRTLFWNF 215
           TYT  T+  ++IV      +TQ D ++ N  + + + F
Sbjct: 500 TYTYDTICQLNIVHYGIGFITQSDIELANTFKAIIYGF 537


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 166 PQEIPETRFCHNRIRRENLLNP 101
           P  IP+ R  H R+RRE    P
Sbjct: 103 PVYIPQPRPPHPRLRREPEAEP 124



 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 166 PQEIPETRFCHNRIRRENLLNP 101
           P  IP+ R  H R+RRE    P
Sbjct: 129 PVYIPQPRPPHPRLRREPEAEP 150


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 179 FKKTTGEIVSIKEIPEKSPVKI 244
           +KK    I++I++IP   PV I
Sbjct: 349 YKKLYYNIINIEQIPVPVPVPI 370


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/38 (18%), Positives = 16/38 (42%)
 Frame = -3

Query: 208 GYNFTSSLFELLQLPQEIPETRFCHNRIRRENLLNPHL 95
           GYN    L ++    +++ +   CH     +  +  H+
Sbjct: 242 GYNHVLKLHQVAHYGEKVYKCTLCHETFGSKKTMELHI 279


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,007
Number of Sequences: 438
Number of extensions: 3376
Number of successful extensions: 22
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)