Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_J16
         (397 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    81   6e-17
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    30   0.15 
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    29   0.35 
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    27   0.80 
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    27   0.80 
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    27   1.4  
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    26   2.4  
SPBC1709.16c |||aromatic ring-opening dioxygenase |Schizosacchar...    25   4.3  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    24   7.4  
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S...    24   7.4  
SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch...    24   9.8  
SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr ...    24   9.8  
SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch...    24   9.8  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 81.0 bits (191), Expect = 6e-17
 Identities = 34/79 (43%), Positives = 52/79 (65%)
 Frame = +1

Query: 82  IVKGKSRLGALVHRKTCTSVALTNVESGDRAAFSKVVEAIKTNFNERYEELRRHWGGGVL 261
           IVK K+RLG ++H+KT   +A+T V   D+   + +V A+  NF+ +Y+E RR WGGG++
Sbjct: 179 IVKNKARLGTVIHQKTAAVLAVTEVREEDKNELASIVSAVDANFSAKYDESRRKWGGGIM 238

Query: 262 GNKSNARIAKLEKAKAREI 318
           G K+ A +AK  KA A  +
Sbjct: 239 GGKTQALLAKRAKAAAATV 257


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 29.9 bits (64), Expect = 0.15
 Identities = 21/73 (28%), Positives = 34/73 (46%)
 Frame = -3

Query: 251 PPQCLRNSS*RSLKLVLIASTTFEKAARSPDSTFVRATLVQVLRCTSAPNRDLPFTISTD 72
           P Q + +SS  S   V + S++   +  S DST + +T   +   T  P    P T S  
Sbjct: 264 PTQTIDSSSFTSSTPVSLTSSSTSSSGSSQDSTTIDSTPSTIATSTLQPTTSSPITTSAP 323

Query: 71  SHLTASAPGRFLS 33
           S L+++ P  + S
Sbjct: 324 S-LSSALPTTYPS 335


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 28.7 bits (61), Expect = 0.35
 Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
 Frame = -3

Query: 317 ISRAFAFSSLAIRAFD-LLPRTPPPQCLRNSS*RSLKLVLIASTTFEKAARSPDSTFVRA 141
           +S+  A SS A    D  L RT PP  L +    SL       + F + A SPD   +  
Sbjct: 258 VSKHEALSSTANIVKDGSLERTEPPNSLNSKISYSLYCNETLVSFFRRPAFSPDGLLL-V 316

Query: 140 TLVQVLRCTSAPNRDLPFT 84
           T    LR    PN ++P+T
Sbjct: 317 TPAGRLRPHGQPNFEVPYT 335


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 27.5 bits (58), Expect = 0.80
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -1

Query: 322 VLSHAPSPSPAWRYARSTCYRGRHRPSVCVTLRN 221
           ++ H PSP  A +Y   T Y G       V +RN
Sbjct: 338 IVLHLPSPKTAQQYRAETLYEGPMDDECAVGIRN 371


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 27.5 bits (58), Expect = 0.80
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -1

Query: 322 VLSHAPSPSPAWRYARSTCYRGRHRPSVCVTLRN 221
           ++ H PSP  A +Y   T Y G       V +RN
Sbjct: 338 IVLHLPSPKTAQQYRAETLYEGPMDDECAVGIRN 371


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 207 QLQ*ALRRVTQTLGRWRPR*QVERAYRQAGE 299
           Q++  L R+ Q +G +  R ++ERA RQA E
Sbjct: 249 QIRFNLERICQDIGNFDVRSRIERAARQARE 279


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +1

Query: 181 SKVVEAIKTNFNERYEELRRHWGGGVLGNKSNARIAKLEKAKAREIA 321
           +K+ EA K  FNE  E+L    GGG L  K+    A+L+  +  + A
Sbjct: 23  AKINEA-KKRFNEHKEKLGAIRGGGSLQEKNAELRAELDNIRNAQAA 68


>SPBC1709.16c |||aromatic ring-opening dioxygenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 285

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 141 DARASLTVYKRTQS*FTLHDQYGLPSY 61
           ++R S+ VY R       +D YG P Y
Sbjct: 72  ESRGSVEVYSRDDENPLFYDYYGFPDY 98


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = -3

Query: 161 DSTFVRATLVQVLRCTSAPNRDLPFTISTDSHLTASAPGRFLSPGITV 18
           D+ F++  L  VLR  +       F   TDS  +   P   + P +++
Sbjct: 301 DADFLKNYLADVLRLEAGKLDSEFFNYETDSRASPQLPKNDIQPAVSI 348


>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 609

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 285 DTRVRLVTEDATAPVSA*LFVTLIEVG 205
           DT +R   +    PV+   FV+L EVG
Sbjct: 278 DTEIRKAEDQTAVPVAKFSFVSLQEVG 304


>SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 234

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 167 SPDSTFVRATLVQVLRCTSAPNRDLPFTISTDSHLTAS 54
           +P+ST +  T V    C  AP+R  P + S+ +  T +
Sbjct: 145 NPNSTVLTFTAVPYDSCLPAPDRHTPSSASSRASETGT 182


>SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 384

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 6   GGALNSDPRAEESARSAC 59
           GG+L++DPR  E   S C
Sbjct: 143 GGSLHADPRIIEECGSCC 160


>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 127

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -2

Query: 132 ASLTVYKRTQS*FTLHDQYGLPSYGKRSWPIPQPGDHCLERRHR 1
           A++ + K+    F  H        G+ SW  P+  D C+ RR R
Sbjct: 2   AAVNIIKKRTKPFKRHQSDRFKRVGE-SWRKPRGIDSCVRRRFR 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,498,913
Number of Sequences: 5004
Number of extensions: 27554
Number of successful extensions: 86
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)