Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_J16
(397 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 101 2e-22
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 101 2e-22
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 85 1e-17
05_03_0629 + 16376575-16376689,16376792-16376839,16376927-163770... 29 1.0
03_05_0261 - 22470565-22470714,22472101-22474270,22474368-224745... 29 1.4
12_02_0964 - 24860373-24860381,24860427-24860768,24861436-248615... 27 5.5
12_01_0518 - 4093206-4094955,4095357-4095810,4095966-4096236,409... 27 5.5
06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991 27 5.5
03_05_1089 - 30304963-30304969,30305027-30305107,30306625-30306953 27 5.5
04_04_1032 - 30259180-30260519,30260650-30260720,30261099-302621... 27 7.2
09_04_0551 - 18488584-18490017 26 9.6
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 26 9.6
01_06_1575 + 38339970-38340786,38340884-38342001,38342099-38343055 26 9.6
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647... 26 9.6
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 101 bits (242), Expect = 2e-22
Identities = 43/82 (52%), Positives = 65/82 (79%)
Frame = +1
Query: 82 IVKGKSRLGALVHRKTCTSVALTNVESGDRAAFSKVVEAIKTNFNERYEELRRHWGGGVL 261
IVKGK+RLG++VH+KT + + LT V++ D+ FSK++EAIK NFN++++E+R+ WGGGV+
Sbjct: 175 IVKGKARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVM 234
Query: 262 GNKSNARIAKLEKAKAREIAQK 327
G+KS A+ EK A+E AQ+
Sbjct: 235 GSKSQAKTKAREKLLAKEAAQR 256
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 101 bits (242), Expect = 2e-22
Identities = 42/82 (51%), Positives = 66/82 (80%)
Frame = +1
Query: 82 IVKGKSRLGALVHRKTCTSVALTNVESGDRAAFSKVVEAIKTNFNERYEELRRHWGGGVL 261
IVKGK+RLG++VH+KT + + LT V++ D+ FSK++EAIK+NFN++++E+R+ WGGG++
Sbjct: 160 IVKGKARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKSNFNDKFDEVRKKWGGGIM 219
Query: 262 GNKSNARIAKLEKAKAREIAQK 327
G+KS A+ EK A+E AQ+
Sbjct: 220 GSKSQAKTKAREKLLAKEAAQR 241
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 85.4 bits (202), Expect = 1e-17
Identities = 38/86 (44%), Positives = 60/86 (69%)
Frame = +1
Query: 70 ESVLIVKGKSRLGALVHRKTCTSVALTNVESGDRAAFSKVVEAIKTNFNERYEELRRHWG 249
E V+ + R +VH+KT + + LT V++ D+ FSK++EAIK NFN++++E+R+ WG
Sbjct: 141 ELVVWLPALCRKMEIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWG 200
Query: 250 GGVLGNKSNARIAKLEKAKAREIAQK 327
GGV+G+KS A+ EK A+E AQ+
Sbjct: 201 GGVMGSKSQAKTKAREKLLAKEAAQR 226
>05_03_0629 +
16376575-16376689,16376792-16376839,16376927-16377012,
16377791-16377878,16378387-16378472,16378604-16378690,
16379111-16379293,16379387-16379470,16379590-16379651,
16379752-16379827,16379906-16379968,16380060-16380141,
16380840-16380916,16381502-16381549,16381681-16381743
Length = 415
Score = 29.5 bits (63), Expect = 1.0
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = -3
Query: 320 AISRAFAFSSLAIRAFDLLPRTPPPQCLRNSS*RSLKLVLIASTTFEKAARSPD 159
A + + A SS R L R+PPP LR + R ++V A T E A +P+
Sbjct: 8 AAASSTAASSATFRPPLLSLRSPPPSSLRLNRRRHFQVVRAAETDKETKANAPE 61
>03_05_0261 -
22470565-22470714,22472101-22474270,22474368-22474540,
22474763-22474924,22476420-22476560
Length = 931
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 220 RYEELRRHWGGGVLGNKSNARIAKLEKAK 306
R +EL WGG LGN ++K+EK K
Sbjct: 854 REKELMDAWGGVGLGNSMKPHLSKIEKDK 882
>12_02_0964 -
24860373-24860381,24860427-24860768,24861436-24861583,
24862070-24862089
Length = 172
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -3
Query: 131 QVLRCTSAPNRDLPFTISTDSHLTASAPGRFLS 33
Q + CT+ P + PF + + H++ PG+ L+
Sbjct: 11 QHINCTNTPEPEQPFKQTKNLHISREEPGQKLA 43
>12_01_0518 -
4093206-4094955,4095357-4095810,4095966-4096236,
4096308-4096628
Length = 931
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -3
Query: 200 IASTTFEKAARSPDSTFVRATLVQVLRCTSAPNRDLPFTISTDSHLT 60
I +TT A SP + TL T PN +L + ++ SH++
Sbjct: 469 IRATTAILKATSPTAPMAPPTLAPTKCLTECPNNNLTWATASSSHIS 515
>06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991
Length = 276
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -1
Query: 310 APSPSPAWRYARSTCYRGRHRPSVCVTLRNA 218
APSPSP A + GRH V R+A
Sbjct: 153 APSPSPQMHAASRRHHHGRHHQQVAPKARSA 183
>03_05_1089 - 30304963-30304969,30305027-30305107,30306625-30306953
Length = 138
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 6 GGALNSDPRAEESARSACRKMGVRTDRE 89
GG ++ R E RS C++MGVR +RE
Sbjct: 73 GGGRRAEARWERGERS-CKEMGVRGNRE 99
>04_04_1032 -
30259180-30260519,30260650-30260720,30261099-30262118,
30263886-30264121
Length = 888
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -1
Query: 397 VTGTPLEXXXXXFKS*TLFRLSPVSVLSHAPSPSPAWRYARST 269
+ G P++ S L+ L H+ S SPAWR R T
Sbjct: 693 IVGHPIQIEILEDGSTDHLVLASDDFLEHSTSASPAWRTGRRT 735
>09_04_0551 - 18488584-18490017
Length = 477
Score = 26.2 bits (55), Expect = 9.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 320 AISRAFAFSSLAIRAFDLLPRTPPPQCL 237
A++RA + S A +F +LPR P P L
Sbjct: 52 AVARAVSSKSSATVSFHMLPRIPDPPSL 79
>06_01_1087 +
8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 26.2 bits (55), Expect = 9.6
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = -3
Query: 323 CAISRAFAFSSLAIRAFDLLPRTPPPQCLRNSS*RSLKLVLIASTTFEKAARS-PDSTF 150
C++ A F S D +P+ PP + +S + +VL+ S + S P S F
Sbjct: 425 CSVFNAITFVSTLASGSDQIPKEPPIEKTLRASIAEISVVLLFSDEMDAGNSSVPISQF 483
>01_06_1575 + 38339970-38340786,38340884-38342001,38342099-38343055
Length = 963
Score = 26.2 bits (55), Expect = 9.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 104 NRDLPFTISTDSHLTASAPGRFLSPGIT 21
++D PF+ S T S P LSPG T
Sbjct: 188 DKDCPFSFSGKKPKTVSEPSVSLSPGFT 215
>01_01_0829 +
6471032-6471870,6472490-6472685,6472772-6472956,
6473206-6473539,6473629-6473833,6474927-6475033,
6475117-6475269
Length = 672
Score = 26.2 bits (55), Expect = 9.6
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = -1
Query: 340 RLSPVSVLSHAPS---PSPAWRYARSTCYRGRHRPSVCVTLRNAH*SWS**LPLPS 182
RLSPVS L+H+ S P+P+ S P+ + R +H S +PLPS
Sbjct: 36 RLSPVSPLTHSSSSKLPTPSSSSGSSGSLSVSRAPASALASRRSH---SGEIPLPS 88
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,600,699
Number of Sequences: 37544
Number of extensions: 237371
Number of successful extensions: 846
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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