Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_J16
(397 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 97 5e-21
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 97 5e-21
AF016452-10|AAB66019.1| 620|Caenorhabditis elegans Gastrulation... 29 1.2
Z68750-3|CAA92964.2| 1092|Caenorhabditis elegans Hypothetical pr... 26 8.5
Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical pr... 26 8.5
Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical pr... 26 8.5
Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical pr... 26 8.5
Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical pr... 26 8.5
AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively... 26 8.5
AF045642-10|AAC02587.1| 459|Caenorhabditis elegans Hypothetical... 26 8.5
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 96.7 bits (230), Expect = 5e-21
Identities = 40/81 (49%), Positives = 63/81 (77%)
Frame = +1
Query: 82 IVKGKSRLGALVHRKTCTSVALTNVESGDRAAFSKVVEAIKTNFNERYEELRRHWGGGVL 261
I+KGK+ LG +V RKT +VAL +V D++A +K+VE + NF+ER+EE+R+HWGGGV+
Sbjct: 184 IIKGKASLGTVVRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSERHEEIRKHWGGGVM 243
Query: 262 GNKSNARIAKLEKAKAREIAQ 324
KS+A+ K+E+A+AR++ +
Sbjct: 244 SAKSDAKKLKIERARARDLGK 264
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 96.7 bits (230), Expect = 5e-21
Identities = 40/81 (49%), Positives = 63/81 (77%)
Frame = +1
Query: 82 IVKGKSRLGALVHRKTCTSVALTNVESGDRAAFSKVVEAIKTNFNERYEELRRHWGGGVL 261
I+KGK+ LG +V RKT +VAL +V D++A +K+VE + NF+ER+EE+R+HWGGGV+
Sbjct: 164 IIKGKASLGTVVRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSERHEEIRKHWGGGVM 223
Query: 262 GNKSNARIAKLEKAKAREIAQ 324
KS+A+ K+E+A+AR++ +
Sbjct: 224 SAKSDAKKLKIERARARDLGK 244
>AF016452-10|AAB66019.1| 620|Caenorhabditis elegans Gastrulation
defective protein 1 protein.
Length = 620
Score = 29.1 bits (62), Expect = 1.2
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = -3
Query: 203 LIASTTFEKAARSPDSTFVRATLVQVLRCTSAPNRDLPFTISTDSHLTASAPGRFLSPGI 24
L+ T E A +S D F V V TS+PN+D P T+ +T + PGI
Sbjct: 361 LLVKTGLENAFKSTDCGFSPRAEV-VFTGTSSPNKDTPGTLQFFDPMTFDLVYKIDYPGI 419
Query: 23 T 21
+
Sbjct: 420 S 420
>Z68750-3|CAA92964.2| 1092|Caenorhabditis elegans Hypothetical
protein K01A6.2 protein.
Length = 1092
Score = 26.2 bits (55), Expect = 8.5
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 149 VRATLVQVLRCTSAPNRDLPFTISTDSHLTA 57
++ATL ++L CTS+P+ L T S L A
Sbjct: 65 LQATLQEMLDCTSSPSTSLDSTDKLPSGLAA 95
>Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical
protein ZC504.4d protein.
Length = 1072
Score = 26.2 bits (55), Expect = 8.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 284 IRAFDLLPRTPPPQCLRN 231
+RA L+PR PPP+ RN
Sbjct: 237 MRALFLIPRNPPPKLKRN 254
>Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical
protein ZC504.4c protein.
Length = 1096
Score = 26.2 bits (55), Expect = 8.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 284 IRAFDLLPRTPPPQCLRN 231
+RA L+PR PPP+ RN
Sbjct: 237 MRALFLIPRNPPPKLKRN 254
>Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical
protein ZC504.4b protein.
Length = 1082
Score = 26.2 bits (55), Expect = 8.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 284 IRAFDLLPRTPPPQCLRN 231
+RA L+PR PPP+ RN
Sbjct: 237 MRALFLIPRNPPPKLKRN 254
>Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical
protein ZC504.4a protein.
Length = 1087
Score = 26.2 bits (55), Expect = 8.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 284 IRAFDLLPRTPPPQCLRN 231
+RA L+PR PPP+ RN
Sbjct: 237 MRALFLIPRNPPPKLKRN 254
>AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively
spliced serine/threonineprotein kinase MIG-15 protein.
Length = 1087
Score = 26.2 bits (55), Expect = 8.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 284 IRAFDLLPRTPPPQCLRN 231
+RA L+PR PPP+ RN
Sbjct: 237 MRALFLIPRNPPPKLKRN 254
>AF045642-10|AAC02587.1| 459|Caenorhabditis elegans Hypothetical
protein C17H12.9 protein.
Length = 459
Score = 26.2 bits (55), Expect = 8.5
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -3
Query: 179 KAARSPDSTFVRATLVQVLRCTSAPNRDLPFTISTDSHLTASAPGRF 39
K R S R TL + R T P+R++ TIS +L + F
Sbjct: 322 KKTRLVFSDIQRRTLQAIFRETKRPSREMQITISQQLNLDPTTVANF 368
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,694,905
Number of Sequences: 27780
Number of extensions: 173972
Number of successful extensions: 464
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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